Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g2050 ATGGAACTTGGGAGGCCTGGCTCAGGCAAAAGAAGATTAAGGGACCTATTGCTTCTAAAGGATAATCGCTTCTGTGCAGATTGTCGTGCTTTAGATCCTAAATGGGCGTCAGCAAATATTGGAGTTTTTATATGCTTGAAATGTTGTGGTGTTCACAGAAGCCTTGGTGCACATATATCAAAGGTGTTATCAGTGACGTTGGATGAATGGAATGATGATGAAATTGATGCCATGGTAGAAGTTGGAGGAAATTCTTCTGCAAATTCAATTTATGAAGCCTATATTCCTGATGGATATTCAAAACCTGGACCAGATGCCACCCATGAACAACGTTCTAAATTTATCCGGGCCAAATATGAACTTCAAGAATTTCTGAAACCGAGCTTGAGAATTTTATCAAACAGCTCCGACAAAAGCAATATCCAAGCAAACTTTTCTTCAAGGCTTATGAACAGTTTTCGTTCAAATTCTGGACAGAAATCAAAAGGTATGGTAGAGTTTATTGGATTATTGAAGGTCAAAGTGGTTAAAGGGACAAACTTAGCTATCAGGGATATGATGTCGAGCGATCCTTATGTAGTCTTGACTCTTGGACAACAGACCGTCCAGACAGCTATAGTCAGGAGCAACTTAAATCCTGTGTGGAATGAGGATCTGATGCTATCTGTACCTCAATGTTTTGGCTCCTTAAAGTTGCAAGTATATGATTACGACACATTTTCAGCAGACGACATAATGGGAGAAGCAGAAATTGATCTCCAGCCCTTGATAACATCCGCAATGGCGTTTGGAGATGCTGGAATGTTTTCAAACATGCAAATTGGAAAATGGCTGAAATCGCACGACAATGCTCTCATAGCGGATAGCATCGTTAATATTGTCGATGGGAAGGTGAAGCAAGAGATAGGACTCAAGCTTCAGAATGTGGAATCAGGAGAACTAGATCTAGAGCTAGAATGGATGGCTCTTGAACAATAG 978 40.49 MELGRPGSGKRRLRDLLLLKDNRFCADCRALDPKWASANIGVFICLKCCGVHRSLGAHISKVLSVTLDEWNDDEIDAMVEVGGNSSANSIYEAYIPDGYSKPGPDATHEQRSKFIRAKYELQEFLKPSLRILSNSSDKSNIQANFSSRLMNSFRSNSGQKSKGMVEFIGLLKVKVVKGTNLAIRDMMSSDPYVVLTLGQQTVQTAIVRSNLNPVWNEDLMLSVPQCFGSLKLQVYDYDTFSADDIMGEAEIDLQPLITSAMAFGDAGMFSNMQIGKWLKSHDNALIADSIVNIVDGKVKQEIGLKLQNVESGELDLELEWMALEQ 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 75364914 75368657 + Hsped.04g20500.1 Hepe04g2050 569188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g2050 325 Gene3D C2 domain 167 325 IPR035892 -
Hepe04g2050 325 Gene3D Arf GTPase activating protein 5 130 IPR038508 -
Hepe04g2050 325 SUPERFAMILY ArfGap/RecO-like zinc finger 10 127 IPR037278 -
Hepe04g2050 325 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 3 325 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Hepe04g2050 325 ProSiteProfiles C2 domain profile. 154 266 IPR000008 -
Hepe04g2050 325 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 138 IPR001164 GO:0005096(InterPro)
Hepe04g2050 325 Pfam Putative GTPase activating protein for Arf 11 126 IPR001164 GO:0005096(InterPro)
Hepe04g2050 325 Pfam C2 domain 169 257 IPR000008 -
Hepe04g2050 325 FunFam Arf-GAP with dual PH domain-containing protein 1 5 133 - -
Hepe04g2050 325 CDD C2_ArfGAP 168 312 - -
Hepe04g2050 325 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 167 325 - -
Hepe04g2050 325 SMART C2_3c 170 265 IPR000008 -
Hepe04g2050 325 CDD ArfGap 22 119 - -
Hepe04g2050 325 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096(InterPro)
Hepe04g2050 325 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096(InterPro)
Hepe04g2050 325 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096(InterPro)
Hepe04g2050 325 SMART arf_gap_3 10 132 IPR001164 GO:0005096(InterPro)
Hepe04g2050 325 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 165 261 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1353 Hepe-Chr1:78719707 Hepe04g2050 Hepe-Chr4:75364914 2.57e-27 dispersed
Hepe04g2050 Hepe-Chr4:75364914 Hepe07g1715 Hepe-Chr7:58987792 1.99e-74 dispersed
Hepe01g0990 Hepe-Chr1:74520958 Hepe04g2050 Hepe-Chr4:75364914 3.38e-113 transposed
Hepe02g2498 Hepe-Chr2:71554621 Hepe04g2050 Hepe-Chr4:75364914 9.78e-111 transposed
Hepe10g1476 Hepe-Chr10:51612456 Hepe04g2050 Hepe-Chr4:75364914 1.51e-08 transposed
Hepe04g2050 Hepe-Chr4:75364914 Hepe07g1714 Hepe-Chr7:58986660 1.42e-81 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g2050 K12486 - csv:101218116 592.808