Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g2056 ATGGGGAAGTTTCAAATCCGGAAATTATTGATTCCACTACTACTTGTGATAATTTCTGAATATCTACAAACTGGAGATGCCAAATCCAATTCTCTTTTCATTAACTGTGGCTCAAGTTCAGATGAAACTGTTGATGGTCGGAAATGGATTGGCGACTTGACTTCTGAAGGGAACTTTTCTGTGGGCAATCTTGGTGCTAATATCAATGCCTCCACAGCCACTTTAAACGGCGGTTCAGTCTTTGAGCCGCTGTATAAAACTGCTCGGGTATTTACCAATTCCCTAAACTATACTTTCAAAGGCGTTTGGGGTAATCATTTTGTTCGGCTCCATTTCTGCCCCTTTCCTTTTGACAACCTCAATGTGAACGAGTCATCATTTTCTGTCTCAGCAAATGGTCTTAGACTGGTTTCAGAGTTGAGTGTTCCCAATGAGATTGCATATAAGAATATGGAGTTTCAACGTTCTGGGGTCAATTCAAGTTCATTCTCTTTGATTAAAGAGTTCATTATTTCTGTCAATTCAGAAGCCTTTGTTCTTGAGTTCTTCCCTAATGGGGGATCATTTGGTTTCATCAATGCTATCGAAATCGTCCCTCTGGTGGATGAACTTTTTGCAGGTTCGATTGATAAGGTGGGTGGAAATGCTGTTAGTTTGAATGTGAGTGAAAGGGGAACTGAAACTATGTATAGATTGAATGTTGGAGGTCCGGAGATCAAGCCCACTCAAGATTCAAATCTTTGGAGAATGTGGGAAGTGGACTCGAGGTATATGATTACAGCAAATGCTGGCTCTGAGATACATAACAGTTCTAATGTAACATATGCTTCCATGAATGACTCCATTGTAGCTCCTCTCCCTGTGTATGAAACAGCCAGAACAATGTCTGAGACTGAAGTGCTCGAGAAAAGGTTCAACATGTCGTGGAAATTCGAAGTTCATCCTGGTTTCGAGTATTTGATTAGATTGCATTTTTGTGAGCTGCTGTATGAGAAGGCAAGAGAGAGGGTTTTCAAGATTTACATAAACAACAGGACTGCAATTGAGAGTTTTGATTTGTTTGTTCGAGCGGGGGGAATGAACAAAGCATATCATGTAGATTTTCTCGAACCAATATCGTCCAAAATCAACACCCTTTGGATTCAATTAGGCCCTGATACGGCTGCAGGTGCTGCAGGGACAGATGCTCTCTTGAATGGTCTGGAAATCTTTAAACTAAGTCAAAATGGGAACCTTGCGTACATTGACAGGTTTAATGCCTTGGAGGAATCGACGGGAAACTCGAAATCTCACATTCTTTGGATAGGCATTGGAGCAGGTTTAACATCTGTTGTTTTTCTTGCTGTTATTACCATTCTCATCGTCTATTTCTGCAGAATCCGGAGAAGGACTTTTACTAAGAAGAACTCTTCTAGGTGGAGAGCAGGATCCAGTCATGGGGCCACTGTCACCAGTACTTATGCCAGAGGGTCCTTGGGGGGAGGCCAAAGTGTATTTGGGACCTTGCCATCTATCAGAGTTGGCAAATGGTTTACATTAGCTGAGATTTTTGCAGCGACAGATAACTTTGATGAAACTCTGATGATCGGAGTTGGTGGTTTTGGTAAGGTCTACAGAGGGGAGATTGATGATGGTACTCTTGTGGCAATCAAGAGAGCCAACCCGCAGTCTCAGCAGGGACTTGCCGAGTTTGAGACCGAAATCGAAATGCTTTCTAAACTTAGGCATAGGCATCTGGTCTCCATGATCGGCTTTTGCGACGAGCAAAAGGAAATGATCTTGGTTTATGAATATATGGCGAATGGCACTCTTAGAAGCCATCTCTTTGGGAGTGGTCTCCCACCTCTGACTTGGAAGCAGCGATTGGAAGTGTGTATTGGTTCAGCCAGGGGACTCCATTACCTTCACACGGGAGCTGAGAGAGGAATAATCCACAGAGATGTGAAGACAACCAACATACTCTTGGATGAGAAATTCGTTGCAAAAATGTCTGATTTTGGTCTTTCAAAAACAGGTCCTGCTTTGGATCATACCCATGTTAGTACTGCAGTTAAGGGCAGCTTCGGCTACCTCGATCCGGAGTATTTCAGGCGCCAGCAGCTGAGTGAAAAATCTGATGTCTATTCTTTTGGTGTGGTATTGTTAGAAGTTGTTTGTGCACGAGCTGTTATAAACCCAAGCTTGCCTAAGGATCAGATAAATCTTGCAGAATGGGCAATGAAATGGCAACGCAAAAAGTTGCTGCACACCATCATCGACCCACATCTCAAAGACAAATATTGTCCCGAGTCTCTGAAAACATTTGGGGAGATAGCAGAAAAATGCCTTGCCGATGAAGGTAAGATTCGTCCAACAATGGGGGAAGTTCTGTGGCACCTAGAATATTCTCTGCAACTCCATGATGCTTGGATCCGCACCAATGACGCAGAAAGTTCAGCACAGACTGAAGAACAAAGGCGAGAGCTTGATGGAGAAGAGACGAAAGCTTCAACCCCAACTGATCACTTATCCTAG 2514 43.2 MGKFQIRKLLIPLLLVIISEYLQTGDAKSNSLFINCGSSSDETVDGRKWIGDLTSEGNFSVGNLGANINASTATLNGGSVFEPLYKTARVFTNSLNYTFKGVWGNHFVRLHFCPFPFDNLNVNESSFSVSANGLRLVSELSVPNEIAYKNMEFQRSGVNSSSFSLIKEFIISVNSEAFVLEFFPNGGSFGFINAIEIVPLVDELFAGSIDKVGGNAVSLNVSERGTETMYRLNVGGPEIKPTQDSNLWRMWEVDSRYMITANAGSEIHNSSNVTYASMNDSIVAPLPVYETARTMSETEVLEKRFNMSWKFEVHPGFEYLIRLHFCELLYEKARERVFKIYINNRTAIESFDLFVRAGGMNKAYHVDFLEPISSKINTLWIQLGPDTAAGAAGTDALLNGLEIFKLSQNGNLAYIDRFNALEESTGNSKSHILWIGIGAGLTSVVFLAVITILIVYFCRIRRRTFTKKNSSRWRAGSSHGATVTSTYARGSLGGGQSVFGTLPSIRVGKWFTLAEIFAATDNFDETLMIGVGGFGKVYRGEIDDGTLVAIKRANPQSQQGLAEFETEIEMLSKLRHRHLVSMIGFCDEQKEMILVYEYMANGTLRSHLFGSGLPPLTWKQRLEVCIGSARGLHYLHTGAERGIIHRDVKTTNILLDEKFVAKMSDFGLSKTGPALDHTHVSTAVKGSFGYLDPEYFRRQQLSEKSDVYSFGVVLLEVVCARAVINPSLPKDQINLAEWAMKWQRKKLLHTIIDPHLKDKYCPESLKTFGEIAEKCLADEGKIRPTMGEVLWHLEYSLQLHDAWIRTNDAESSAQTEEQRRELDGEETKASTPTDHLS 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 75407206 75410663 + Hsped.04g20560.1 Hepe04g2056 569194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g2056 837 Pfam Malectin-like domain 34 405 IPR024788 -
Hepe04g2056 837 MobiDBLite consensus disorder prediction 812 837 - -
Hepe04g2056 837 Gene3D - 27 200 - -
Hepe04g2056 837 Gene3D - 224 408 - -
Hepe04g2056 837 FunFam FERONIA receptor-like kinase 31 201 - -
Hepe04g2056 837 FunFam Receptor-like protein kinase FERONIA 599 816 - -
Hepe04g2056 837 CDD STKc_IRAK 529 794 - -
Hepe04g2056 837 Gene3D Phosphorylase Kinase; domain 1 503 598 - -
Hepe04g2056 837 MobiDBLite consensus disorder prediction 809 837 - -
Hepe04g2056 837 FunFam receptor-like protein kinase FERONIA 495 598 - -
Hepe04g2056 837 PANTHER OS07G0166700 PROTEIN 511 800 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Hepe04g2056 837 SUPERFAMILY Protein kinase-like (PK-like) 502 795 IPR011009 -
Hepe04g2056 837 SMART serkin_6 523 795 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g2056 837 ProSitePatterns Protein kinases ATP-binding region signature. 529 551 IPR017441 GO:0005524(InterPro)
Hepe04g2056 837 ProSiteProfiles Protein kinase domain profile. 523 795 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe04g2056 837 Gene3D Transferase(Phosphotransferase) domain 1 599 820 - -
Hepe04g2056 837 Pfam Protein tyrosine and serine/threonine kinase 528 790 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g2056 837 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe04g2056 837 FunFam Receptor-like protein kinase FERONIA 225 408 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0676 Hepe-Chr4:60241003 Hepe04g2056 Hepe-Chr4:75407206 2.54e-203 dispersed
Hepe04g1631 Hepe-Chr4:71682644 Hepe04g2056 Hepe-Chr4:75407206 3.20e-69 dispersed
Hepe04g2056 Hepe-Chr4:75407206 Hepe06g0410 Hepe-Chr6:15484148 1.60e-196 dispersed
Hepe04g2056 Hepe-Chr4:75407206 Hepe09g0097 Hepe-Chr9:790976 8.03e-203 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72778 PF12819 Malectin_like 4.30E-33 CL0202 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g2056 - - - 0.0