Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g2070 ATGTTGTTTGAGATGGAGAATAATTACCAAGAAGGTGATTTGACTGATATTGTGAGAGGAAGAAAAAGCACTTCTTCTTCTAATTATGGTTGCAAAACAGAAGATCAAGAGCAGCAGCAGCAACAACAACAACAACCCTTTTCTTCATCAGAGTGGCAATTTTCATCACAAGTAGTAGCCATGAATAATAATAATTTCTCTTCTTCTTCTTCGTCTTCGGAATTACAAGATCGACGACGACGACAAGCTGCAGCGAGATCATCATCAAGAGAAGAAGAAGATCAATTAGTAGAATACAGTTTTGGGGATCCATTTTGTGCTTCAGCAGCTATGAGAGATCCACTTCTTCTTCATCATCATCAAGAGGATCAGCTGGATGATTTGTTGTATAATAATAATTCTTCTTCAAGTGCTACTTTTTTCAATGGTGGTTGTGGTAATTTAGAGGACAAAAGTGCTTTTGGTGGTGTTGTTAACAACAACAATCAACAAGATGATGTTATCATGATCAAAAGGCCTTCTTCTTGCAATATATTCTCAAGAATGCTTCAGATCTCTCCAGCAACAACAACTTCAATTACAAACAAATTCCCAATTCTTTCAGATCATTCACCTTCTTCTTTGCTAATTCCCAATTCCAATAATAATTCTCCTACTACAAATCATCATCATTTTCTTGACAATAATATTAATAATCCCTCCTCTCTTCAGATCTCTTCTCCTAGGAATCCGCCTGGTATCAAGCGAAGGAAGAGCCAAGCAAGGAAGGTGGTTTGTGTTCCTGCTCCAGTGGCTGCCAGTAGCAGACCAAATGGGGAAGTTATTCCTTCTGATCTCTGGGCTTGGAGGAAATATGGTCAGAAACCTATTAAAGGTTCTCCATATCCTAGGGGGTATTATAGATGCAGCAGCTCAAAGGGTTGTTCAGCCAGAAAACAAGTGGAAAGAAGTAGAACAGATCCAAACATGCTGGTGATTACATACACATCTGAGCACAACCATCCATGGCCAACTCAAAGAAATGCTCTAGCTGGCTCTTCAAGGTCCCAACAATCAAAAAACAACAACACCACACCCAATTCTTCAAAACTCTCAGCTTCCACAAAGCCAACCACATCAACAACTCAAGAAGACAAAATTAAGGAAGATCAAAACAACAACAACAATAATGGAAGAACAAGATCCTCAGCAGCATCAAATAACAATGTTAAGGAAGAGGGTGCTGAAGAGATTGATCAGAAACAGTTTGAAACAGAAGATAATATTGGAGATCATCATCAATTGAGTGAAGAAGGGTTTCAATATAGGGTGGCAATGGCAATGGCAAGCAATAACAACAATCAAAGTGATGATTTTTTTGCAGATTTGGAAGAATTAGAGACCCACCCTTTAAATCTATTGTTCACACAAGGCCAAAAATTAGACCAAATTAGCAAAGGGGGCGGCTTAGACGACCTGGTTGCATTCAATAATCTCTTCAATTGGGGGGCACCTGAAAACAACAACAACAACAACAATTCCAACAATTCATTTGAGGAACCACCAACTGCTAGCAAGAGAGGTTTTTATTAA 1572 38.74 MLFEMENNYQEGDLTDIVRGRKSTSSSNYGCKTEDQEQQQQQQQQPFSSSEWQFSSQVVAMNNNNFSSSSSSSELQDRRRRQAAARSSSREEEDQLVEYSFGDPFCASAAMRDPLLLHHHQEDQLDDLLYNNNSSSSATFFNGGCGNLEDKSAFGGVVNNNNQQDDVIMIKRPSSCNIFSRMLQISPATTTSITNKFPILSDHSPSSLLIPNSNNNSPTTNHHHFLDNNINNPSSLQISSPRNPPGIKRRKSQARKVVCVPAPVAASSRPNGEVIPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSSRSQQSKNNNTTPNSSKLSASTKPTTSTTQEDKIKEDQNNNNNNGRTRSSAASNNNVKEEGAEEIDQKQFETEDNIGDHHQLSEEGFQYRVAMAMASNNNNQSDDFFADLEELETHPLNLLFTQGQKLDQISKGGGLDDLVAFNNLFNWGAPENNNNNNNSNNSFEEPPTASKRGFY 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 75521484 75525316 - Hsped.04g20700.1 Hepe04g2070 569208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g2070 523 MobiDBLite consensus disorder prediction 1 95 - -
Hepe04g2070 523 MobiDBLite consensus disorder prediction 208 254 - -
Hepe04g2070 523 MobiDBLite consensus disorder prediction 499 523 - -
Hepe04g2070 523 MobiDBLite consensus disorder prediction 386 403 - -
Hepe04g2070 523 SMART WRKY_cls 276 336 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g2070 523 MobiDBLite consensus disorder prediction 74 95 - -
Hepe04g2070 523 FunFam probable WRKY transcription factor 14 250 330 - -
Hepe04g2070 523 MobiDBLite consensus disorder prediction 19 73 - -
Hepe04g2070 523 MobiDBLite consensus disorder prediction 499 515 - -
Hepe04g2070 523 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 13 461 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Hepe04g2070 523 MobiDBLite consensus disorder prediction 320 374 - -
Hepe04g2070 523 MobiDBLite consensus disorder prediction 293 414 - -
Hepe04g2070 523 Pfam WRKY DNA -binding domain 278 335 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g2070 523 Gene3D WRKY domain 250 330 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g2070 523 MobiDBLite consensus disorder prediction 208 242 - -
Hepe04g2070 523 ProSiteProfiles WRKY domain profile. 271 337 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe04g2070 523 SUPERFAMILY WRKY DNA-binding domain 275 337 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0116 Hepe-Chr2:1353391 Hepe04g2070 Hepe-Chr4:75521484 3.93e-33 dispersed
Hepe02g1153 Hepe-Chr2:14329088 Hepe04g2070 Hepe-Chr4:75521484 5.10e-28 dispersed
Hepe04g2070 Hepe-Chr4:75521484 Hepe07g1659 Hepe-Chr7:57982642 4.27e-66 dispersed
Hepe04g2070 Hepe-Chr4:75521484 Hepe06g0728 Hepe-Chr6:53314997 2.62e-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55521 PF03106 WRKY 3.10E-25 CL0274 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g2070 - - - 0.0