Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe04g2090 ATGGCGCCGGGCCTCCGAGACTTGCAGCTCGCCCAGGTCGCCGCCGCAGACCCTCGTCCGTCGGCTGAACTTTCCGACGATCTCGAGGATGTGCGGTTGCTCGATTCATATGACAGGCAGGAGGATAATTTGGGCAAAATTGGGGAAGGTATGAGGAGGCTTCAGGTTAGAGTTTCTGGGATGACCTGCGCTGCTTGCTCTAATTCCGTCGAGGCTGCTCTCAGAGGCGTTAATGGCGTCTTGATGGCTTCCGTTGCTTTGCTTCAGAACAGAGCTGACGTCGTTTTTGACCCCAATTTGGTTAAGGATGAAGACATCAAGGAAGCAATAGAAGATGCTGGGTTCGAGGCTGAGATTATACCTGAAACCACTTCAGTTGGAAAGAAGCCGCAGGGAACACTGGTGGGTCAATTTACCATAGGAGGTATGACATGTGCAGCATGTGTGAATTCGGTGGAAGGCATTTTGAAAGATATTCCTGGTGTTAGAAGAGCAGTAGTTGCTTTGGCCACATCGTTGGGAGAAGTTGAATATGATCCAACTATAACCAATAAAGACGATATAGTTAATGCAATTGAGGATGCTGGATTTGAAGCTTCATTTGTACAGAGCAGTGAGCAAGATAAAATTTTACTAGCGGTTGCAGGCATTACGGGCGAGGTTGATGTACAGTTTTTGGAAGTCATACTTAGCAACTTGAATGGGGTGAGACGGTTTCTCTTTAACAGGACATCAGGAAAACTTGAAGTTGTTTTTGACCCAGAAGTTGTTGGTCCCAGATCCTTAGTGGATGAGATTGAGGGAAGAAGCAACAGAAAGTTTAAGCTGCATGTTACAAGCCCTTACTCGAGGTTAACATCTAAAGATGTTGAAGAAGCTACTAACATGTTTCGGCTTTTTATCTCCAGTCTGTTTCTCAGTGTTCTGATCTTTCTCCTACGAGTAGTATGTCCTCACATTCCTTTAATCTACTCATTGTTACTCCGGCGGTGTGGGCCTTTCCTCATGGATGATTGGTTAAAGTGGGCATTGGTGACTGTTGTGCAATTTGTCATTGGAAAACGCTTTTATATTGCAGCTGCTAGAGCTCTTCGAAATGGTTCAACTAACATGGATGTCTTGGTTGCTTTGGGTACCACAGCCTCTTATGTCTATTCTGTTTGTGCCCTTCTCTATGGTGCAGTCACCGGATTTTGGTCTCCTACTTATTTTGAAACAAGTGCTATGTTGATAACCTTTGTATTATTGGGAAAGTATTTGGAGTGTCTTGCCAAGGGGAAAACATCAGATGCCATCAAGAAGTTGGTAGAACTTGCTCCTGCAACTGCTCTATTGCTTATCCGGGATAAAGGTGGTAATTTGATTGAAGAAAGGGAAATAGATGCTCTGTTACTTCAACCTGGCGACGTGTTGAAAGTTCATCCTGGTACGAAGATTCCAGCAGATGGTGTTGTTGTTTGGGGTTCAAGTTATGTTAATGAGAGTATGGTTACTGGAGAATCTATACCTGTTTTGAAGGAGGTTAACTCACAAGTTATTGGGGGTACAATTAATTTTCATGGAGCCCTTCACATTCAAGCAACAAAAGTAGGATCTGATGCAGTTTTGAATCAGATTATTAGTTTGGTTGAGACAGCACAGATGTCTAAAGCCCCAATTCAGAAATTTGCTGATTTTGTAGCAAGCATATTCGTTCCAACAGTTGTTGCTATGTCATTGTGTACATTATTTGGTTGGTACGTTGGAGGAATTCTTGGGGCTTATCCAGCTGAATGGCTCCCAGAAAATGGAAATTACTTTGTATTTTCCCTCATGTTTGCGATATCAGTGGTGGTGATTGCATGTCCTTGTGCACTAGGCTTGGCCACACCGACTGCTGTCATGGTTGCAACAGGGGTTGGTGCCAGCAATGGTGTCTTGATCAAAGGAGGAGATGCTTTGGAGAGGGCCCAGAAGGTTAAGTACGTGATATTTGATAAAACAGGCACACTAACCCAAGGGAAAGCAACCGTTACCACTGCCAAAGTCTTCACTGAAATTTCTCTAGGAGACTTCCTTAAGCTGGTTGCTTCAGCAGAGGCTAGCAGTGAACACCCATTGGGAAAAGCTATTGTCGAGTATGCACGTCATTTCCATTTCTTCGATGAGCCTTCTGCGACCAAAAATGTGGAAAACCAAAGTAAAGTATCTTCTGCATGGCTTTTCGATGTCACAGATTTCTCAGCATTGCCAGGCCAAGGAATCCACTGCTTTATAGAGGGAAAAAGGATTATTGTTGGCAACAGGAAGTTGATGAATGAAAATGGAATCTCCATAGCACCTCATGTAGATAATTTCGTTATAGAGCTTGAAGAAAGTGCAAAGACCGGTATTCTTGTTGCATGTGATGACAACTTAATTGGAGTTTTGGGAATAGCAGATCCACTGAAGAGAGAAGCTGCAGTTGTTGTTGAGGGTCTTGTAAAAATGGGAGTTTCTCCAGTCATGGTTACAGGGGATAATTGGAGAACGGCTCGGGCTGTCGCCAAAGAGCTTGGTATACAAGACGTGAGAGCAGAAGTCATGCCAGCAGGAAAAGCGGAAGTCATTCAAAACTTCCAAAAGGATGGAAGCATAGTTGCAATGGTAGGTGATGGTATCAACGACTCGCCCGCTCTAGCTGCTTCTGATATCGGAATCGCAATCGGTGCGGGGACTGATATTGCCATTGAGGCAGCCAACTTCGTCTTGATGAGAAATAATTTAGAAGACGTAATTACAGCCATCGATCTCTCAAGGAAGACTTTCAATCGGATTCGATTGAATTACGTGTTTGCAATGGCCTACAATGTGATAGCAATTCCTGTTGCTGCCGGAGTCTTCTTTCCTTCTTTGGGGATTAAATTGCCTCCATGGGCGGCCGGTGCATGCATGGCTTTGTCATCTGTAAGTGTCGTTTGCTCTTCTTTACTTCTTAGAAGATACAAAAGACCAAGACTTACAACAATACTTGAAATAACTGTAGAATAG 3009 43.93 MAPGLRDLQLAQVAAADPRPSAELSDDLEDVRLLDSYDRQEDNLGKIGEGMRRLQVRVSGMTCAACSNSVEAALRGVNGVLMASVALLQNRADVVFDPNLVKDEDIKEAIEDAGFEAEIIPETTSVGKKPQGTLVGQFTIGGMTCAACVNSVEGILKDIPGVRRAVVALATSLGEVEYDPTITNKDDIVNAIEDAGFEASFVQSSEQDKILLAVAGITGEVDVQFLEVILSNLNGVRRFLFNRTSGKLEVVFDPEVVGPRSLVDEIEGRSNRKFKLHVTSPYSRLTSKDVEEATNMFRLFISSLFLSVLIFLLRVVCPHIPLIYSLLLRRCGPFLMDDWLKWALVTVVQFVIGKRFYIAAARALRNGSTNMDVLVALGTTASYVYSVCALLYGAVTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLLIRDKGGNLIEEREIDALLLQPGDVLKVHPGTKIPADGVVVWGSSYVNESMVTGESIPVLKEVNSQVIGGTINFHGALHIQATKVGSDAVLNQIISLVETAQMSKAPIQKFADFVASIFVPTVVAMSLCTLFGWYVGGILGAYPAEWLPENGNYFVFSLMFAISVVVIACPCALGLATPTAVMVATGVGASNGVLIKGGDALERAQKVKYVIFDKTGTLTQGKATVTTAKVFTEISLGDFLKLVASAEASSEHPLGKAIVEYARHFHFFDEPSATKNVENQSKVSSAWLFDVTDFSALPGQGIHCFIEGKRIIVGNRKLMNENGISIAPHVDNFVIELEESAKTGILVACDDNLIGVLGIADPLKREAAVVVEGLVKMGVSPVMVTGDNWRTARAVAKELGIQDVRAEVMPAGKAEVIQNFQKDGSIVAMVGDGINDSPALAASDIGIAIGAGTDIAIEAANFVLMRNNLEDVITAIDLSRKTFNRIRLNYVFAMAYNVIAIPVAAGVFFPSLGIKLPPWAAGACMALSSVSVVCSSLLLRRYKRPRLTTILEITVE 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 75723278 75730309 - Hsped.04g20900.1 Hepe04g2090 569228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe04g2090 1002 FunFam Copper-transporting ATPase 1, putative 425 547 - -
Hepe04g2090 1002 ProSiteProfiles Heavy-metal-associated domain profile. 208 274 IPR006121 GO:0046872(InterPro)
Hepe04g2090 1002 FunFam Probable copper-transporting ATPase HMA5 783 933 - -
Hepe04g2090 1002 SUPERFAMILY HMA, heavy metal-associated domain 205 268 IPR036163 GO:0046872(InterPro)
Hepe04g2090 1002 CDD HMA 55 118 IPR006121 GO:0046872(InterPro)
Hepe04g2090 1002 ProSitePatterns Heavy-metal-associated domain. 58 88 IPR017969 GO:0046872(InterPro)
Hepe04g2090 1002 Gene3D - 425 547 - -
Hepe04g2090 1002 SUPERFAMILY HAD-like 656 982 IPR036412 -
Hepe04g2090 1002 NCBIfam copper ion binding protein 137 199 IPR006122 GO:0005507(InterPro)
Hepe04g2090 1002 NCBIfam copper ion binding protein 55 117 IPR006122 GO:0005507(InterPro)
Hepe04g2090 1002 SFLD p-type atpase 639 928 IPR044492 -
Hepe04g2090 1002 FunFam Copper-exporting P-type ATPase 756 807 - -
Hepe04g2090 1002 Pfam Heavy-metal-associated domain 56 116 IPR006121 GO:0046872(InterPro)
Hepe04g2090 1002 Pfam Heavy-metal-associated domain 138 198 IPR006121 GO:0046872(InterPro)
Hepe04g2090 1002 ProSiteProfiles Heavy-metal-associated domain profile. 134 200 IPR006121 GO:0046872(InterPro)
Hepe04g2090 1002 PRINTS P-type cation-transporting ATPase superfamily signature 823 833 - -
Hepe04g2090 1002 PRINTS P-type cation-transporting ATPase superfamily signature 493 507 - -
Hepe04g2090 1002 PRINTS P-type cation-transporting ATPase superfamily signature 801 812 - -
Hepe04g2090 1002 PRINTS P-type cation-transporting ATPase superfamily signature 657 671 - -
Hepe04g2090 1002 PRINTS P-type cation-transporting ATPase superfamily signature 899 911 - -
Hepe04g2090 1002 PRINTS P-type cation-transporting ATPase superfamily signature 876 895 - -
Hepe04g2090 1002 CDD P-type_ATPase_Cu-like 298 972 - -
Hepe04g2090 1002 Gene3D - 624 933 IPR023214 -
Hepe04g2090 1002 ProSitePatterns E1-E2 ATPases phosphorylation site. 659 665 IPR018303 -
Hepe04g2090 1002 ProSiteProfiles Heavy-metal-associated domain profile. 52 118 IPR006121 GO:0046872(InterPro)
Hepe04g2090 1002 SUPERFAMILY HMA, heavy metal-associated domain 48 121 IPR036163 GO:0046872(InterPro)
Hepe04g2090 1002 FunFam Copper-exporting P-type ATPase A 133 202 - -
Hepe04g2090 1002 NCBIfam HAD-IC family P-type ATPase 734 958 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Hepe04g2090 1002 NCBIfam HAD-IC family P-type ATPase 410 684 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Hepe04g2090 1002 Gene3D - 757 807 IPR023299 GO:0000166(InterPro)
Hepe04g2090 1002 Gene3D - 664 756 IPR023299 GO:0000166(InterPro)
Hepe04g2090 1002 ProSitePatterns Heavy-metal-associated domain. 140 169 IPR017969 GO:0046872(InterPro)
Hepe04g2090 1002 NCBIfam heavy metal translocating P-type ATPase 371 985 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Hepe04g2090 1002 Pfam haloacid dehalogenase-like hydrolase 653 889 - -
Hepe04g2090 1002 Gene3D - 136 201 - -
Hepe04g2090 1002 PRINTS H+-transporting ATPase (proton pump) signature 907 932 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Hepe04g2090 1002 PRINTS H+-transporting ATPase (proton pump) signature 876 892 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Hepe04g2090 1002 PRINTS H+-transporting ATPase (proton pump) signature 848 864 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Hepe04g2090 1002 Pfam E1-E2 ATPase 438 635 - -
Hepe04g2090 1002 SFLD Haloacid Dehalogenase 639 928 - -
Hepe04g2090 1002 Gene3D - 51 123 - -
Hepe04g2090 1002 FunFam Copper-exporting P-type ATPase A 50 120 - -
Hepe04g2090 1002 CDD HMA 137 200 IPR006121 GO:0046872(InterPro)
Hepe04g2090 1002 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 31 999 - -
Hepe04g2090 1002 SUPERFAMILY HMA, heavy metal-associated domain 133 205 IPR036163 GO:0046872(InterPro)
Hepe04g2090 1002 SUPERFAMILY Calcium ATPase, transduction domain A 457 543 IPR008250 -
Hepe04g2090 1002 FunFam Copper-transporting ATPase RAN1 664 755 - -
Hepe04g2090 1002 SUPERFAMILY Calcium ATPase, transmembrane domain M 394 964 IPR023298 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1918 Hepe-Chr1:83992199 Hepe04g2090 Hepe-Chr4:75723278 5.22e-113 dispersed
Hepe04g2090 Hepe-Chr4:75723278 Hepe06g1554 Hepe-Chr6:66245480 7.18e-279 dispersed
Hepe04g2090 Hepe-Chr4:75723278 Hepe07g0336 Hepe-Chr7:3365476 2.16e-114 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe04g2090 K17686 - csv:101205642 1791.55