Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0048 ATGAATAACATAAATCAAGCGATAAATACACTGGCTGGTGGATCTTCAGACAACAGAACCAATAATTTCGCTATGGAAATTCCGAATTTCAAGTCTCCTTCTTCGTATCTTTCTGGTTTAAGCCCAACTGAGCTTCTTAATTCTCCTCTTTTCTTCTCTTTTGGTGTTTTTCCCTCTCCTACTACTGGTTCTTTCAACTTGAGAAATGATTATGATGGTGTTCAGCAGCAAGAAATGAAGGGAGATTTCAAAAATTTCTTTGATTCTTCGTTTAACCCTCAAACAGAATCCTCCCTTTCCTCTTATTTTCAGTCCTCTTCCTCCAACGTGACTCCACTGAATCCAAGCGGTTTGTCGTGTAATGAAAGTGGAGCGAAATCTGAAGTTGTCGCCACGAAAATGGCGGCAGCTGAATTAAAGCCAAATTCTCAGCTGAGTCTTTACAATAGAGAACAGCTAAAATCGGAAAACGATGGATATAATTGGAGAAAATATGGGCAAAAATCGGTGAAAGGAAGCGAAAATCCACGTAGTTATTATAAGTGCACTTTTCCAAATTGCCCAACCAAGAAGAAAGTTGAGAGATGTTTAGATGGACAAATTACTGAGATTGTTTATAAGGGAAGTCATAATCACGCCAAGCCACCGCCGACCAGACGTTCTTCCAACTCCCAACTTTATGATCCCTCGCCGGAATCCGCCGTGCTGCAGGAGGATTCCTCCGTGCTTGGGGAGGATGAATTCGAACCCAATTCGCCGTTTAGCAACTCCGTGGACGATAATGAAAATGAACCCGAACCTAAAAGATGGAAAGGGGAAAATGAAAATGAGGGATTTTGTGGGGGTGGAAGCAGAGCGGTGAAAGAGCCAAGAATTGTGGTTCAAACAACGAGCGAAATTGATATATTGCCTGATGGCTATAGATGGAGGAAATACGGACAAAAAGTTGTCAAAGGAAATCCAAATCCGAGGAGCTACTACAAATGCACATCTTTAGGCTGCCCGGTAAGAAAACATATTGAGCGAGCGGCCAACGACATGAGGGCCGTGATCACCACCTACGAAGGCAAACACAACCATGAAGTTCCGGCAGCACGCGGCGGAAGCGGTGGCTATAATGCCGTCAATCGACCTGTACCGACCAACATTCCATTGCCGGTGAGGCCGTCCGCCGTCGTCAGTCACTATTACCCGACAAATTTTCAAAATTTACCCATGTCGGAAATTGGAGCACAAGCACCATTCGCATTTCAAACATCACAAGGAGTGCCCCCAAGTTTTCAAGTTTCAGGATTTGGGTCAGCAGCAGCCAAGGAAGAAGCCAAAGATGACATATTCTTCAACTCATTTCTATCATAG 1359 43.93 MNNINQAINTLAGGSSDNRTNNFAMEIPNFKSPSSYLSGLSPTELLNSPLFFSFGVFPSPTTGSFNLRNDYDGVQQQEMKGDFKNFFDSSFNPQTESSLSSYFQSSSSNVTPLNPSGLSCNESGAKSEVVATKMAAAELKPNSQLSLYNREQLKSENDGYNWRKYGQKSVKGSENPRSYYKCTFPNCPTKKKVERCLDGQITEIVYKGSHNHAKPPPTRRSSNSQLYDPSPESAVLQEDSSVLGEDEFEPNSPFSNSVDDNENEPEPKRWKGENENEGFCGGGSRAVKEPRIVVQTTSEIDILPDGYRWRKYGQKVVKGNPNPRSYYKCTSLGCPVRKHIERAANDMRAVITTYEGKHNHEVPAARGGSGGYNAVNRPVPTNIPLPVRPSAVVSHYYPTNFQNLPMSEIGAQAPFAFQTSQGVPPSFQVSGFGSAAAKEEAKDDIFFNSFLS 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 521195 524942 - Hsped.05g00480.1 Hepe05g0048 569313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0048 452 Gene3D WRKY domain 290 356 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe05g0048 452 SUPERFAMILY WRKY DNA-binding domain 152 215 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe05g0048 452 Pfam WRKY DNA -binding domain 157 212 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe05g0048 452 Pfam WRKY DNA -binding domain 305 361 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe05g0048 452 ProSiteProfiles WRKY domain profile. 298 363 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe05g0048 452 MobiDBLite consensus disorder prediction 207 284 - -
Hepe05g0048 452 FunFam WRKY transcription factor 144 216 - -
Hepe05g0048 452 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 92 367 IPR044810 GO:0003700(InterPro)
Hepe05g0048 452 MobiDBLite consensus disorder prediction 261 275 - -
Hepe05g0048 452 Gene3D WRKY domain 142 216 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe05g0048 452 ProSiteProfiles WRKY domain profile. 151 215 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe05g0048 452 MobiDBLite consensus disorder prediction 215 237 - -
Hepe05g0048 452 SMART WRKY_cls 156 214 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe05g0048 452 SMART WRKY_cls 303 362 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe05g0048 452 FunFam WRKY transcription factor 33 290 356 - -
Hepe05g0048 452 SUPERFAMILY WRKY DNA-binding domain 295 363 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0048 Hepe-Chr5:521195 Hepe08g0694 Hepe-Chr8:6248899 1.30e-85 dispersed
Hepe10g1368 Hepe-Chr10:49997133 Hepe05g0048 Hepe-Chr5:521195 1.59e-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55534 PF03106 WRKY 8.90E-25 CL0274 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0048 K13424 - csv:101205651 685.256