Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0055 ATGCAGATTCTTGCAGAAAAAACAGCTGATTGGAGCTTTAAATCATCCAATGAGAAAAGAAAATGGAAGAATCAACAATGGAGAATCTGTTCTTCATATCTCATTGCTCTGTTTTTTGCTCATTTTTTGGTATTTTCTCTTCAACCGGTCACTGGCCAGATGTGGGATGGAGTGGCTGTTACACAAGGAGATTTTCAAGCTCTTCAAGCTGTAAAAAATGAACTCATCGATCTAAAAGGAGCTTTAAATAGCTGGAATGGCAGTAATGGAGCTTGTTCCGGGCAGTGGGCAGGAATCAAATGTGTGATGGGGCAGGTCATTGCTATACAGCTTCCATGGAAGGCTCTCGCCGGCCGGATTTCCGATAGGATTGGGCAGCTCCGGGAGCTTCGGAAGCTCAGCCTCCATGACAATGTGATCTCCGGTGCTGTCCCTCGCTCGCTCGGGTACCTTCCAAATCTCAGAGGAATTTATCTTTTCAACAACAGATTTTCAGGTTCTATTCCCCCTACAATTGGTAATCTTCCACTTCTTCAAACTCTTGATTTGAGCAACAATTTGCTCACTGGAGAAATTCCTTCTGGTCTAGCTAATTCAACCAAATTGATTAGAGTTAATCTGAGTTACAATTCATTGTCGGGATCGATCCCAAGTAGCTTTACGCAGTCGTTTTCTCTTATAATTCTTGCCCTTCAGCATAATAATATTTCTGGGACTGTCCCAGAATTTTGGAGTGGTTCTGGAAACAGAACTTCCCCACTTGGGGTTTTAACCCTTGATCATAATGTTATATCTGGAGCAATTCCAGCTTCTTTGAGTAAATTGGAATGGCTTCAAGAGATTTCCATTAGTGAAAATAAGATCTCTGGGGCTATACCAGGTGAAATAGGCAGGCTGAAGAGGCTTCGCCTTTTGGATTTGTCGAACAACGCCATTAATGGCGGCTTCCCTTCGAGTTTCTCCAATCTCTCATCTCTTGAGTTATTGAATGTCGAAAACAATCGCCTTGAAAGCCAGATTCCAGGAGATATTGATAGGTTGCAGGATCTCTCAGTGGTCAAGCTTGGGAAGAATCGTTTTAGTGGGGAGATTCCTGCAAGTTTTGGGAACATTTCTGCTATTAGCCAACTTGATTTCTCAGAAAATAACTTCACGGGACAGATTCCAGCATCATTGACCCATTTGTTGAATCTAACATCTTTCAATGTCTCTTACAACAATCTCTCTGGCCCTGTCCCAATTCTCCTATCAAATAAGTTCAATTCGAGCTCTTTTGTTGGGAACCTTCAACTCTGTGGTTTTAGTACTTCAACTCCATGTCTACCTGCATCCTCCCCACAGAATATTACAACTCCATCAATCGAGGTCCCGAAACCGCACCACCGCCGCAGACTTAGTGTTAAGGACATAATTCTGATAGCGGCCGGAGCTCTGTTGGTGCTTCTACTTATTCTTTGTTCGATTCTGCTCTGTTGTTTGTTATCAAAAAGAGCTGCTGCCAAGAAGAATGACACGACGACGGCCAAGCAAGTTGCTGTCAGGAGCGTCGAGAAGGCAGCACCAGGCAGCACCGAAGTGGGGGCGGGTGAAGCCGGTGGAAAACTAGTTCATTATGATGGGCCATTTGTTTTCACTGCTGATGATCTTCTGTGTGCAACTGCGGAAATCATGGGCAAGAGCACATATGGAACAGCATACAAAGCAACATTAGAAGATGGCAATGAAGTTGCAGTGAAAAGATTGAGGGAAAAGACAACAAAGGGGCAGAAAGAATTTGAAACCGAAGTTGCAGGACTCGGAAAAATTCGACACCCAAATCTACTTGCTCTTAGAGCTTACTACTTAGGCCCCAAAGGAGAGAAGCTTCTTGTCTTTGACTACATGCCTAGAGGAAGCCTCTCATCCTTCCTTCATGCTCGTGGGCCGGAAACCTCAGTTGATTGGCTGACAAGGATGAAGATAGTGATCGGAATTACGCAGGGCTTGAACTACCTCCACACAGAAGAGAATCTAGTTCATGGAAACCTCACGTCGAGCAACATTCTGCTGGACGATCAGACCAATGCTCGTATTGCAGATTTCGGGCTTCCTAAGCTCATGACTTCAGCTGCAGCCACAAATGTGATTGCCACAGCAGGATCACAGGGCTACAATGCACCAGAGCTAACAAAAACCAAAAAGACCACAGCAAAGACAGATGTTTACAGCCTTGGAGTCATAATTTTGGAACTTTTGACAGGAAAATCTCCTGGAGAAGCCATGGAAGGAATGGATTTACCTCAGTGGGTGGCCTCAATTGTAAAGGAGGAGTGGACAAATGAAGTTTTTGATTTAGAGCTTATGAAAGATACACATACACCAAATATTGGTGATGAACTACTGAACACTCTGAAACTAGCCCTGCATTGTGTTGATCCCTCGCCAGCGGCACGGCCGGACGTCGAGCAAATTCTCCAGCAACTGGAGGAAATTAAGGCTTCTACTTCCGGTGAGGATGGCGCCAAAAATGAACAAGCAAATGAATAG 2526 44.42 MQILAEKTADWSFKSSNEKRKWKNQQWRICSSYLIALFFAHFLVFSLQPVTGQMWDGVAVTQGDFQALQAVKNELIDLKGALNSWNGSNGACSGQWAGIKCVMGQVIAIQLPWKALAGRISDRIGQLRELRKLSLHDNVISGAVPRSLGYLPNLRGIYLFNNRFSGSIPPTIGNLPLLQTLDLSNNLLTGEIPSGLANSTKLIRVNLSYNSLSGSIPSSFTQSFSLIILALQHNNISGTVPEFWSGSGNRTSPLGVLTLDHNVISGAIPASLSKLEWLQEISISENKISGAIPGEIGRLKRLRLLDLSNNAINGGFPSSFSNLSSLELLNVENNRLESQIPGDIDRLQDLSVVKLGKNRFSGEIPASFGNISAISQLDFSENNFTGQIPASLTHLLNLTSFNVSYNNLSGPVPILLSNKFNSSSFVGNLQLCGFSTSTPCLPASSPQNITTPSIEVPKPHHRRRLSVKDIILIAAGALLVLLLILCSILLCCLLSKRAAAKKNDTTTAKQVAVRSVEKAAPGSTEVGAGEAGGKLVHYDGPFVFTADDLLCATAEIMGKSTYGTAYKATLEDGNEVAVKRLREKTTKGQKEFETEVAGLGKIRHPNLLALRAYYLGPKGEKLLVFDYMPRGSLSSFLHARGPETSVDWLTRMKIVIGITQGLNYLHTEENLVHGNLTSSNILLDDQTNARIADFGLPKLMTSAAATNVIATAGSQGYNAPELTKTKKTTAKTDVYSLGVIILELLTGKSPGEAMEGMDLPQWVASIVKEEWTNEVFDLELMKDTHTPNIGDELLNTLKLALHCVDPSPAARPDVEQILQQLEEIKASTSGEDGAKNEQANE 841
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 571051 573747 + Hsped.05g00550.1 Hepe05g0055 569320
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0055 841 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 253 320 - -
Hepe05g0055 841 Gene3D Ribonuclease Inhibitor 61 249 IPR032675 -
Hepe05g0055 841 Gene3D Ribonuclease Inhibitor 250 335 IPR032675 -
Hepe05g0055 841 SMART LRR_typ_2 299 322 IPR003591 -
Hepe05g0055 841 SMART LRR_typ_2 175 199 IPR003591 -
Hepe05g0055 841 SMART LRR_typ_2 323 347 IPR003591 -
Hepe05g0055 841 SMART LRR_typ_2 151 174 IPR003591 -
Hepe05g0055 841 SMART LRR_typ_2 127 150 IPR003591 -
Hepe05g0055 841 Pfam Protein tyrosine and serine/threonine kinase 555 821 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe05g0055 841 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 265 828 IPR052451 -
Hepe05g0055 841 Gene3D Ribonuclease Inhibitor 336 444 IPR032675 -
Hepe05g0055 841 FunFam Pollen receptor-like kinase 1 628 835 - -
Hepe05g0055 841 CDD STKc_IRAK 557 824 - -
Hepe05g0055 841 Gene3D Transferase(Phosphotransferase) domain 1 629 840 - -
Hepe05g0055 841 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 61 217 - -
Hepe05g0055 841 FunFam Leucine-rich repeat receptor-like protein kinase 537 627 - -
Hepe05g0055 841 Pfam Leucine Rich Repeat 153 175 IPR001611 GO:0005515(InterPro)
Hepe05g0055 841 Pfam Leucine Rich Repeat 178 198 IPR001611 GO:0005515(InterPro)
Hepe05g0055 841 Pfam Leucine Rich Repeat 202 221 IPR001611 GO:0005515(InterPro)
Hepe05g0055 841 Pfam Leucine Rich Repeat 397 418 IPR001611 GO:0005515(InterPro)
Hepe05g0055 841 Pfam Leucine Rich Repeat 376 395 IPR001611 GO:0005515(InterPro)
Hepe05g0055 841 Pfam Leucine rich repeat N-terminal domain 63 101 IPR013210 -
Hepe05g0055 841 Gene3D Phosphorylase Kinase; domain 1 557 628 - -
Hepe05g0055 841 MobiDBLite consensus disorder prediction 822 841 - -
Hepe05g0055 841 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 321 440 - -
Hepe05g0055 841 PRINTS Leucine-rich repeat signature 178 191 - -
Hepe05g0055 841 PRINTS Leucine-rich repeat signature 299 312 - -
Hepe05g0055 841 Pfam Leucine rich repeat 254 312 IPR001611 GO:0005515(InterPro)
Hepe05g0055 841 SUPERFAMILY Protein kinase-like (PK-like) 555 825 IPR011009 -
Hepe05g0055 841 ProSiteProfiles Protein kinase domain profile. 551 824 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe05g0055 841 SUPERFAMILY L domain-like 85 432 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1264 Hepe-Chr3:67892043 Hepe05g0055 Hepe-Chr5:571051 8.55e-70 dispersed
Hepe05g0055 Hepe-Chr5:571051 Hepe08g0676 Hepe-Chr8:6049883 2.74e-73 dispersed
Hepe01g0674 Hepe-Chr1:68953899 Hepe05g0055 Hepe-Chr5:571051 2.45e-172 wgd
Hepe04g1879 Hepe-Chr4:73725561 Hepe05g0055 Hepe-Chr5:571051 3.55e-42 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72787 PF07714 PK_Tyr_Ser-Thr 3.20E-40 CL0016 Hepe PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0055 - - - 0.0