Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0062 ATGAACACCACCGTCCCGCCGGGAAACATGGCCGCCGGAACTCCACCGTGGCTAAACACCGGCGACAACTCCTGGCAAATCACAGCCTCCACTCTCGTCGGACTTCAAAGCATGCCCGGCCTCGTAATTCTCTACGCCAGCATCGTCAAAAAGAAATGGGCCGTAAATTCCGCCTTCATGGCCCTTTACGCCTTCGCCGCCGTTCTAATCTGTTGGGTAATCGTCGGTTACCGGATGGCCTTCGGCGATCAGCTACTTCCTCTGTGGGGAAGAGGATATCCAGCTCTGAATCAAAATTACCTAATTGCCCAAGCAAATATCCCTGAAAGCGGCCATGAAAGCAACGACGGAAGGGTAACGCCGAGAATTGAACCGAATATTCCGATGGCTTCGCTTGTTTACTTCCAATTTACATTTGCTGCGATTACTGTGATTTTACTTGCTGGCTCTGTTCTTGCGAGAATGAATATTAAAGCCTGGATGGCTTTCGTGCCTCTTTGGGTAATTTTATCATACACCGTCGGAGCTTATTCTATTTGGGGCGGCGGGTTTCTCTTTCAATGGGGCGTAATTGATTACTCCGGCGGCTATGTTATTCATCTTTCTTCTGGGATTGCTGGGTTAACGGCGGCTTATTGGGTTGGGCCGAGGATTAGGAGTGATAGAGAGAGATTTCCGCCGAATAATGTGTTGCTGATGTTGGCCGGAGCTGGGATGCTGTGGATGGGGTGGTCGGGATTTAACGGCGGCGCGCCGCACTCGGCGAACGTGGTGGCGTCGATTGCGGTGCTGAATACGAACGTGAGTGCGGCGACGAGCCTGCTGGTTTGGACTACTTTGGATGTGTTTTACTTTGGGAAGCCATCGGTGATCGGAGCCATTCAGGGTATGATGACGGGCTTGGCTTGCGTTACCCCCGGCGCAGGAGTTGTGCAGACGTGGGCGGCTATTATAATGGGGGTTCTGGCAGGGAGTATTCCATGGGTATCCATGATGATTCTTCATAAGAAAATGAGTTTCTTGCAAAAGGTTGACGACACGCTTGGCGTATTTCACACGCACGCGGTGGCGGGAATGATGGGCGGGCTTTTAACCGGACTTTTGGCGGAGCCCACTCTATGCAATCTATACCTTCCGATCCACGGCACACGCGGTGCCTTTTACGGCCAAAGCGGCGGCGTTCAGTTCCTGAAACAACTGGCCGGAGCGATGTTCATAATAGGATGGAACATCGTGTCGACGACCATAATTCTCCTCTTTATTCGACTGTTTATGCCGTTGAGAATGCCGGACGAGGAACTCATGATCGGCGACGACGCCGTGCACGGCGAGGAGGCTTATGCTCTTTGGGGCGACGGCGAGAAATTCGATCCCAGAAGACACGGCAATGCGGCGGCGAATATGGAAGAAGGAACATCATCGCCTTATATCAATGGTGCCAGAGGAATGATCGTCAATTTGTAA 1464 52.19 MNTTVPPGNMAAGTPPWLNTGDNSWQITASTLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVIVGYRMAFGDQLLPLWGRGYPALNQNYLIAQANIPESGHESNDGRVTPRIEPNIPMASLVYFQFTFAAITVILLAGSVLARMNIKAWMAFVPLWVILSYTVGAYSIWGGGFLFQWGVIDYSGGYVIHLSSGIAGLTAAYWVGPRIRSDRERFPPNNVLLMLAGAGMLWMGWSGFNGGAPHSANVVASIAVLNTNVSAATSLLVWTTLDVFYFGKPSVIGAIQGMMTGLACVTPGAGVVQTWAAIIMGVLAGSIPWVSMMILHKKMSFLQKVDDTLGVFHTHAVAGMMGGLLTGLLAEPTLCNLYLPIHGTRGAFYGQSGGVQFLKQLAGAMFIIGWNIVSTTIILLFIRLFMPLRMPDEELMIGDDAVHGEEAYALWGDGEKFDPRRHGNAAANMEEGTSSPYINGARGMIVNL 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 633934 639274 + Hsped.05g00620.1 Hepe05g0062 569327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0062 487 NCBIfam ammonium transporter 22 447 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Hepe05g0062 487 ProSitePatterns Ammonium transporters signature. 192 217 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Hepe05g0062 487 FunFam Ammonium transporter 8 450 - -
Hepe05g0062 487 SUPERFAMILY Ammonium transporter 17 429 - -
Hepe05g0062 487 Pfam Ammonium Transporter Family 25 447 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Hepe05g0062 487 Gene3D Ammonium transporter AmtB like domains 4 450 IPR029020 -
Hepe05g0062 487 PANTHER AMMONIUM TRANSPORTER MEP2 16 458 IPR001905 GO:0005886(PANTHER)|GO:0008519(InterPro)|GO:0008519(PANTHER)|GO:0016020(InterPro)|GO:0072488(InterPro)|GO:0072488(PANTHER)
Hepe05g0062 487 PRINTS Rhesus blood group protein signature 136 152 IPR002229 GO:0005886(InterPro)
Hepe05g0062 487 PRINTS Rhesus blood group protein signature 317 335 IPR002229 GO:0005886(InterPro)
Hepe05g0062 487 PRINTS Rhesus blood group protein signature 262 284 IPR002229 GO:0005886(InterPro)
Hepe05g0062 487 PRINTS Rhesus blood group protein signature 231 249 IPR002229 GO:0005886(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0062 Hepe-Chr5:633934 Hepe10g0275 Hepe-Chr10:2886008 4.32e-184 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0062 K03320 - csv:101207321 893.649