Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0086 ATGGAAATGGCCTCCACCACCCCCAAAACCGTCGAGGAAATCTTCAAAGATTACACCGGTCGCCGTGCTGCTCTTGTTCGTGCCCTCGCTCACGATGTGGATGAATTCTATGGCCTCTGTGATCCAGATAAGGAAAATTTGTGTTTATATGGACATCCCAATGAAACATGGGAAGTGGTTCTTCCAGTAGAAGAGGTTCCACCGGAGCTTCCCGAGCCTGCACTTGGAATCAATTTTGCAAGAGATGGTATGAACAGAAAAGATTGGCTATCTCTAGTTGCTGTACATAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTATCTTGGAGCAAGGCTTAACCGAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGAACGGAAGCCTGTCAAAGAGAAGCCTAGTGTAGATAGTGGAAGCAGATCACAAGGAAGCGCTAAGAGATCCAATGATGGGCAGGTGAAAAGCAACCCCAAACCTGCCGAACAGAGTGGCGAGGAGGATGTCGATGAACATAGTGAAACCCTCTGCGGTAGCTGTGGTGACAATTACAGTGCAGATGAGTTCTGGATTGGCTGTGACATCTGCGAAAGGTGGTACCACGGGAAGTGCGTAAAGATAACACCTGCCAAAGCTGATAATATCAAACAATACAAATGTCCATCTTGCAGCATGAAGAAGGGCAGACAGTAG 723 46.61 MEMASTTPKTVEEIFKDYTGRRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTERKPVKEKPSVDSGSRSQGSAKRSNDGQVKSNPKPAEQSGEEDVDEHSETLCGSCGDNYSADEFWIGCDICERWYHGKCVKITPAKADNIKQYKCPSCSMKKGRQ 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 951169 953517 - Hsped.05g00860.1 Hepe05g0086 569351

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0086 240 MobiDBLite consensus disorder prediction 139 182 - -
Hepe05g0086 240 ProSitePatterns Zinc finger PHD-type signature. 187 233 IPR019786 -
Hepe05g0086 240 Pfam Alfin 10 135 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Hepe05g0086 240 ProSiteProfiles Zinc finger PHD-type profile. 184 236 IPR019787 -
Hepe05g0086 240 PANTHER CPG BINDING PROTEIN 7 239 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Hepe05g0086 240 SMART PHD_3 186 234 IPR001965 -
Hepe05g0086 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 234 IPR013083 -
Hepe05g0086 240 FunFam PHD finger alfin-like protein 179 235 - -
Hepe05g0086 240 SUPERFAMILY FYVE/PHD zinc finger 176 238 IPR011011 -
Hepe05g0086 240 MobiDBLite consensus disorder prediction 146 170 - -
Hepe05g0086 240 CDD PHD_AL_plant 186 236 IPR044104 -
Hepe05g0086 240 Pfam PHD-finger 187 233 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0086 K26274 - - csv:101211970 466.463
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0086 Hepe-Chr5:951169 Hepe08g1423 Hepe-Chr8:16817032 2.55e-109 dispersed
Hepe01g0714 Hepe-Chr1:69827679 Hepe05g0086 Hepe-Chr5:951169 1.38e-135 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g250 . . . . . . . . Cmo06g00221 Cmo14g00058 . . . . . . Cpe08g01225 . . . . . . . . . . . . . . Cone3ag0428 Cone10ag0390 . . . . . Cme04g02724 . . . . . . Bma01g01801 . . . . Cma06g00227 Cma14g00064 Car06g00201 Car14g00046 Cpe03g00051 . Bhi11g01831 Tan08g2139 Cmetu08g0029 Lac10g3221 Hepe05g0086 . . Cla10g02093 Cam10g2172 Cec10g2211 Cco10g2197 Clacu10g2174 Cmu10g2914 Cre10g2315 Lsi03g02216 Csa03g03069 Chy04g02257 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe07g0556 . 1 255 Alfin-like Transcription Factor Family AT1G14510 80.8 6.0e-110 394.0
Hepe08g1423 . 1 252 Alfin-like Transcription Factor Family AT1G14510 71.8 3.2e-95 345.1
Hepe03g1442 . 10 251 Alfin-like Transcription Factor Family AT1G14510 65.3 6.2e-91 330.9
Hepe08g2683 . 9 248 Alfin-like Transcription Factor Family AT1G14510 65.4 5.3e-90 327.8
Hepe01g0714 . 8 245 Alfin-like Transcription Factor Family AT1G14510 60.6 2.4e-79 292.4
Hepe05g0086 . 8 237 Alfin-like Transcription Factor Family AT1G14510 61.3 2.4e-79 292.4
Hepe08g1423 . 1 254 Alfin-like Transcription Factor Family AT5G26210 78.0 2.7e-110 395.2
Hepe08g2683 . 1 250 Alfin-like Transcription Factor Family AT5G26210 74.0 2.6e-105 378.6
Hepe03g1442 . 1 250 Alfin-like Transcription Factor Family AT5G26210 65.1 2.9e-96 348.6
Hepe07g0556 . 9 257 Alfin-like Transcription Factor Family AT5G26210 73.2 8.8e-93 337.0
Hepe01g0714 . 7 247 Alfin-like Transcription Factor Family AT5G26210 58.4 7.0e-82 300.8
Hepe05g0086 . 8 239 Alfin-like Transcription Factor Family AT5G26210 58.5 3.8e-80 295.0
Hepe08g1423 . 1 254 Alfin-like Transcription Factor Family AT3G42790 73.4 3.3e-100 361.7
Hepe08g2683 . 1 250 Alfin-like Transcription Factor Family AT3G42790 69.7 5.2e-98 354.4
Hepe03g1442 . 1 250 Alfin-like Transcription Factor Family AT3G42790 61.2 2.8e-91 332.0
Hepe07g0556 . 9 257 Alfin-like Transcription Factor Family AT3G42790 71.9 3.4e-89 325.1
Hepe01g0714 . 7 247 Alfin-like Transcription Factor Family AT3G42790 58.4 3.7e-80 295.0
Hepe05g0086 . 8 239 Alfin-like Transcription Factor Family AT3G42790 59.2 8.3e-80 293.9
Hepe01g0714 . 1 247 Alfin-like Transcription Factor Family AT5G05610 77.0 1.8e-111 399.1
Hepe05g0086 . 1 240 Alfin-like Transcription Factor Family AT5G05610 74.7 2.9e-106 381.7
Hepe08g1423 . 8 254 Alfin-like Transcription Factor Family AT5G05610 64.9 1.7e-90 329.3
Hepe03g1442 . 10 253 Alfin-like Transcription Factor Family AT5G05610 63.8 2.5e-89 325.5
Hepe08g2683 . 8 250 Alfin-like Transcription Factor Family AT5G05610 61.9 3.4e-86 315.1
Hepe07g0556 . 9 257 Alfin-like Transcription Factor Family AT5G05610 58.1 6.6e-82 300.8
Hepe01g0714 . 43 247 Alfin-like Transcription Factor Family AT3G11200 78.4 1.6e-93 339.3
Hepe05g0086 . 43 240 Alfin-like Transcription Factor Family AT3G11200 76.2 1.1e-86 316.6
Hepe08g1423 . 44 254 Alfin-like Transcription Factor Family AT3G11200 66.4 7.5e-75 277.3
Hepe03g1442 . 44 253 Alfin-like Transcription Factor Family AT3G11200 63.1 5.4e-73 271.2
Hepe08g2683 . 44 250 Alfin-like Transcription Factor Family AT3G11200 59.4 1.9e-70 262.7
Hepe07g0556 . 44 257 Alfin-like Transcription Factor Family AT3G11200 60.7 1.7e-66 249.6
Hepe07g0556 . 1 154 Alfin-like Transcription Factor Family AT2G02470 87.0 2.6e-76 282.3
Hepe08g1423 . 1 158 Alfin-like Transcription Factor Family AT2G02470 78.5 2.0e-65 246.1
Hepe08g2683 . 9 166 Alfin-like Transcription Factor Family AT2G02470 74.1 1.9e-63 239.6
Hepe03g1442 . 10 158 Alfin-like Transcription Factor Family AT2G02470 74.5 1.4e-61 233.4
Hepe01g0714 . 8 155 Alfin-like Transcription Factor Family AT2G02470 70.2 3.3e-55 212.2
Hepe05g0086 . 8 175 Alfin-like Transcription Factor Family AT2G02470 62.4 1.6e-54 209.9
Hepe08g1423 . 1 167 Alfin-like Transcription Factor Family AT5G20510 78.0 1.2e-73 273.1
Hepe03g1442 . 1 164 Alfin-like Transcription Factor Family AT5G20510 75.4 3.0e-69 258.5
Hepe08g2683 . 1 160 Alfin-like Transcription Factor Family AT5G20510 73.9 5.6e-68 254.2
Hepe07g0556 . 3 152 Alfin-like Transcription Factor Family AT5G20510 73.5 9.2e-63 236.9
Hepe01g0714 . 7 163 Alfin-like Transcription Factor Family AT5G20510 63.8 1.2e-54 209.9
Hepe05g0086 . 4 157 Alfin-like Transcription Factor Family AT5G20510 61.9 7.3e-52 200.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55536 PF12165 Alfin 6.60E-67 No_clan Hepe TF