Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0086 ATGGAAATGGCCTCCACCACCCCCAAAACCGTCGAGGAAATCTTCAAAGATTACACCGGTCGCCGTGCTGCTCTTGTTCGTGCCCTCGCTCACGATGTGGATGAATTCTATGGCCTCTGTGATCCAGATAAGGAAAATTTGTGTTTATATGGACATCCCAATGAAACATGGGAAGTGGTTCTTCCAGTAGAAGAGGTTCCACCGGAGCTTCCCGAGCCTGCACTTGGAATCAATTTTGCAAGAGATGGTATGAACAGAAAAGATTGGCTATCTCTAGTTGCTGTACATAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTATCTTGGAGCAAGGCTTAACCGAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGAACGGAAGCCTGTCAAAGAGAAGCCTAGTGTAGATAGTGGAAGCAGATCACAAGGAAGCGCTAAGAGATCCAATGATGGGCAGGTGAAAAGCAACCCCAAACCTGCCGAACAGAGTGGCGAGGAGGATGTCGATGAACATAGTGAAACCCTCTGCGGTAGCTGTGGTGACAATTACAGTGCAGATGAGTTCTGGATTGGCTGTGACATCTGCGAAAGGTGGTACCACGGGAAGTGCGTAAAGATAACACCTGCCAAAGCTGATAATATCAAACAATACAAATGTCCATCTTGCAGCATGAAGAAGGGCAGACAGTAG 723 46.61 MEMASTTPKTVEEIFKDYTGRRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTERKPVKEKPSVDSGSRSQGSAKRSNDGQVKSNPKPAEQSGEEDVDEHSETLCGSCGDNYSADEFWIGCDICERWYHGKCVKITPAKADNIKQYKCPSCSMKKGRQ 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 951169 953517 - Hsped.05g00860.1 Hepe05g0086 569351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0086 240 MobiDBLite consensus disorder prediction 139 182 - -
Hepe05g0086 240 ProSitePatterns Zinc finger PHD-type signature. 187 233 IPR019786 -
Hepe05g0086 240 Pfam Alfin 10 135 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Hepe05g0086 240 ProSiteProfiles Zinc finger PHD-type profile. 184 236 IPR019787 -
Hepe05g0086 240 PANTHER CPG BINDING PROTEIN 7 239 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Hepe05g0086 240 SMART PHD_3 186 234 IPR001965 -
Hepe05g0086 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 234 IPR013083 -
Hepe05g0086 240 FunFam PHD finger alfin-like protein 179 235 - -
Hepe05g0086 240 SUPERFAMILY FYVE/PHD zinc finger 176 238 IPR011011 -
Hepe05g0086 240 MobiDBLite consensus disorder prediction 146 170 - -
Hepe05g0086 240 CDD PHD_AL_plant 186 236 IPR044104 -
Hepe05g0086 240 Pfam PHD-finger 187 233 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0086 Hepe-Chr5:951169 Hepe08g1423 Hepe-Chr8:16817032 2.55e-109 dispersed
Hepe01g0714 Hepe-Chr1:69827679 Hepe05g0086 Hepe-Chr5:951169 1.38e-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55536 PF12165 Alfin 6.60E-67 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0086 K26274 - csv:101211970 466.463