Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0118 ATGCTTCAGATCCGGCTTAGCAAGGTTCCACAGGCCGAAGGTGGTGGTGGAGCAGTTAAGCCGTTACCGGCGGAGACTGTGATGGTTGCATGCCCTGACCACCTTATCCTTGCTGATCTTCCTGTAGCAAAGGGCATTGGTGCGGCTACTGCTGCTTCCATTCTCAAGTCTGTGGGTCGCAGGTCTCGCCGTCAGCTTGGAGAACGAGTTCATTTTTGTGTCAGATGTGATTTTCCCATTGCAATTTATGGTCGCCTGAGCCCTTGTGAGCATGCTTTCTGTCTTGATTGTGCAAGGAGCGATTCTATATGCTACCTTTGTGATGACCGTATCCAGAAGATTCAAACTATAAAATTGATGGAGGGGATCTTCATTTGTGCTGCCCCACACTGTCTCAAGTCTTTTCTTAAGAGGAGTGAATTTGAATCTCATATACACGAGAGCCATGCTGACCTTCTTAAGCCAAATGCAGAAAAGGAAGATGGAAATGAAATTGAGGTTCATAGTACCAAACAATCTACTGCTTCTGAATCCACTGCCCGAGGTCCATCAAGACCAATCATATCTCCAGGTTCAAATTCCCAGCCTCAAGAACGTGAAGAAAAATTTCATCGTCAACAATCTAGAGACCAACCCAGATCTGGCATGCAGCAAAAGCAAATGCCAATTTTTGGTCAGAACCAAAACAATACATCTGAGTCTCAACAAGACAGCGGTCATTCACAAAGCTTTGATCGACATGGCCCTCATGGCCGTTTTCCTCCACAAAATTTTGAAGTACAGGGTACTCCACATCATGAATCCAGTCAGTTTTCAGAGAAACAGCAAGGAATTCTAACCGACAGTCCATATTCTCAGTACCCTCCTTTGCAACCAATTCCGCCACCAAATTTTATGGTTCCAGCCAACTCAAATCCAATGTTGACTCCCCCTCTACCATTTGGTTATCCTCCTTTTCCAATTGAGGGTGCACAACAATACTACAGTACACCCTATGAAGTGTCACGACAAGACGCTGCAGCAGAGACTGGATCCGAGCAAGGGTCATTGCTAGGCTTTCCACCAGGAGCAGCAGGAGGAATGAATTTCTCGGCAACTTATCCGCAATCTTGGAATGCTGGACAACCCGGGGTTCCTTATGAACATAATGCTGGAGGAGGTCAAGGAATGCCTGATGCTTTTCCTAATACGCCTGATTCTCAAGGAAGACATGGATTTTACCAAGGAGATTATAGACGCAGCCCTGGAGGTTTACCTGTGAATTCTTCTGTCTCGTCGATGGCCAACAAGGGCATGGATCTGGGGCATGCAGGTAATGCGATGGACATAAGGGATGGTAAAGGAATATTGGCACCACAGCCTCTAGTACAATTGCCTCCGCCTCCACCGCCACCGCCGTACATGTCGCATAATAAGCGGGGTAAGTTTTATTCAGGAGATATGGATCATGATGGGCAAGGCCATGGATGGCAGAATGACAGCCATAGCCGAGATAGCTTTGGAAGTGGACAAGACTGA 1518 46.9 MLQIRLSKVPQAEGGGGAVKPLPAETVMVACPDHLILADLPVAKGIGAATAASILKSVGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSICYLCDDRIQKIQTIKLMEGIFICAAPHCLKSFLKRSEFESHIHESHADLLKPNAEKEDGNEIEVHSTKQSTASESTARGPSRPIISPGSNSQPQEREEKFHRQQSRDQPRSGMQQKQMPIFGQNQNNTSESQQDSGHSQSFDRHGPHGRFPPQNFEVQGTPHHESSQFSEKQQGILTDSPYSQYPPLQPIPPPNFMVPANSNPMLTPPLPFGYPPFPIEGAQQYYSTPYEVSRQDAAAETGSEQGSLLGFPPGAAGGMNFSATYPQSWNAGQPGVPYEHNAGGGQGMPDAFPNTPDSQGRHGFYQGDYRRSPGGLPVNSSVSSMANKGMDLGHAGNAMDIRDGKGILAPQPLVQLPPPPPPPPYMSHNKRGKFYSGDMDHDGQGHGWQNDSHSRDSFGSGQD 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1371365 1373749 - Hsped.05g01180.1 Hepe05g0118 569383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0118 505 ProSitePatterns Zinc finger RING-type signature. 89 98 IPR017907 -
Hepe05g0118 505 MobiDBLite consensus disorder prediction 210 242 - -
Hepe05g0118 505 CDD RING-HC_HAKAI-like 71 120 IPR040380 -
Hepe05g0118 505 MobiDBLite consensus disorder prediction 152 274 - -
Hepe05g0118 505 MobiDBLite consensus disorder prediction 168 196 - -
Hepe05g0118 505 MobiDBLite consensus disorder prediction 454 469 - -
Hepe05g0118 505 MobiDBLite consensus disorder prediction 475 491 - -
Hepe05g0118 505 FunFam E3 ubiquitin-protein ligase Hakai 70 124 - -
Hepe05g0118 505 ProSitePatterns Zinc finger C2H2 type domain signature. 126 149 IPR013087 -
Hepe05g0118 505 ProSiteProfiles Zinc finger C2H2 type domain profile. 124 150 IPR013087 -
Hepe05g0118 505 MobiDBLite consensus disorder prediction 152 167 - -
Hepe05g0118 505 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 481 IPR040383 GO:0016567(InterPro)|GO:0016567(PANTHER)|GO:0030155(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)
Hepe05g0118 505 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 124 IPR013083 -
Hepe05g0118 505 MobiDBLite consensus disorder prediction 451 505 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0118 K15685 - csv:101220422 835.099