Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe05g0126 | ATGGCGCCTCCGGAAGTTTCTCAGTCCGACATTGATTTGGAGCAGCAGGGGAATCAAACCCATCGGCAGTCTGTTAGCGGTAGTGATTTGAGCGCCGATTGCAGTGTCTATTTCTCCGACGCCGACGAGGGTTCGTGTTATTCTCAGTTTTTTTCGACCAATGGTGGTTCTTACGATGAGTATAGGTTTGCTTTCGTTTCTCAGCCGGAGGTTGTTTTGGATTCTCGCCGTGTTTCATCGGTTTCGGATCGTTCTGTGGAGGTTGAGAATGAGAATGGGATTACTGAAATTAAGGTGCATTTGGCTAAAGTAGAGAGGGATTGCAGGATTTGTCATTTGGGTTTGGAGAGTAATAGCCAAGAATCTGGAATCCCAATCGAATTGGGTTGTTCGTGCAAGGATGATTTGGCTGCTGCTCATAAGCATTGTGCTGAAACCTGGTTTAAAATTAAAGGAAACAAGACGTGTGAGATTTGCCATTCCGTTGCACGAAACATTCTCGGACCAAATGAGGTTGAATCAACAGAGCAATCTAATGAATCCAACAACGCCTCCTCGACAACTGCAGTTGCTGCATCAATTCCCTCATCAGACACCCAAAGCTTCTGGCGTGGCCACCGGTTTCTGAACTTTCTACTTGCCTGTATGGTATTCGCTTTTGTTATATCTTGGCTCTTTCACTTCAACGTGCCCTCGTAA | 699 | 45.92 | MAPPEVSQSDIDLEQQGNQTHRQSVSGSDLSADCSVYFSDADEGSCYSQFFSTNGGSYDEYRFAFVSQPEVVLDSRRVSSVSDRSVEVENENGITEIKVHLAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNESNNASSTTAVAASIPSSDTQSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS | 232 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 1475258 | 1478192 | + | Hsped.05g01260.1 | Hepe05g0126 | 569391 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe05g0126 | 232 | MobiDBLite | consensus disorder prediction | 170 | 190 | - | - | |
| Hepe05g0126 | 232 | SUPERFAMILY | RING/U-box | 105 | 163 | - | - | |
| Hepe05g0126 | 232 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 100 | 166 | IPR011016 | GO:0008270(InterPro) | |
| Hepe05g0126 | 232 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Hepe05g0126 | 232 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 95 | 168 | IPR013083 | - | |
| Hepe05g0126 | 232 | SMART | ringv_2 | 107 | 160 | IPR011016 | GO:0008270(InterPro) | |
| Hepe05g0126 | 232 | PANTHER | ZINC FINGER, RING-CH-TYPE | 21 | 231 | - | - | |
| Hepe05g0126 | 232 | CDD | RING_CH-C4HC3_MARCH | 108 | 160 | - | - | |
| Hepe05g0126 | 232 | MobiDBLite | consensus disorder prediction | 9 | 27 | - | - | |
| Hepe05g0126 | 232 | Pfam | RING-variant domain | 108 | 159 | IPR011016 | GO:0008270(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe04g0085 | Hepe-Chr4:28273600 | Hepe05g0126 | Hepe-Chr5:1475258 | 1.07e-08 | dispersed | |
| Hepe04g1925 | Hepe-Chr4:74186486 | Hepe05g0126 | Hepe-Chr5:1475258 | 2.13e-24 | dispersed | |
| Hepe10g1294 | Hepe-Chr10:48716842 | Hepe05g0126 | Hepe-Chr5:1475258 | 2.21e-43 | wgd | |
| Hepe02g3339 | Hepe-Chr2:82988698 | Hepe05g0126 | Hepe-Chr5:1475258 | 1.49e-78 | wgd | |
| Hepe04g0791 | Hepe-Chr4:61956364 | Hepe05g0126 | Hepe-Chr5:1475258 | 8.85e-66 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe05g0126 | - | - | - | 0.0 |