Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe05g0180 | ATGAATTTTTCCTCCATTCCTTCTTATCTTGATCCTTCCAACTGGCAGCAAGTCACTCATCAAGTGGGAAGTAGTAGTAGCACTGGAGTTGGATCTCAGCTTCCACCTCCTCCGCCTCCACCTCCACCGCCACCTCCGCCTCATGGCGTCGGTGGTACCGGTTCGATCCGGCCTGGTTCAATGTCCGAGCGCGCTCGAATGGCGAATATTCCGATGCCTGAGGCAGCATTGAAATGTCCAAGATGTGAATCAACCAACACTAAGTTTTGCTACTTCAACAATTACAGCCTCACTCAGCCTCGCCATTTCTGCAAGACTTGTCGAAGGTACTGGACGAGGGGTGGCGCTCTGAGAAGCGTCCCGGTCGGGGGCGGGTGCCGGAGGAACAAGAGAAGCAAAGGGAGAGGTTCGAAATCGCCGCCAGTCAGCTCGGACCGGCAACAAACGAGCGGTTCGGGCAATTCGTCGTCAAGTGCAATAGCTTCCAACAATAGTGGAGGCCTTTCACCACAGATCCCATCTGCACTCCGCTTCATGGCTCCTCTCCACCAACAACTCACTGACTTCGACATCGGAGGCTTCAACTACGGCGGTGGAGGTGGCGGTCTCTCAGCCCCGGCCACCGCCGCCGCCGACCTGAATTTCCAATTGGGAAACACTAATTTATTAGCAGCTGGAGGAACAAGCATTGGATCTCTCTTGGGATTTGACCAACAATGGAGGCTCCAGCAACAAGCTCCTCCTCAATTTCCCTTCTTGTCCGGTCTCGACCCTTTCGACGTCGGCGGAGACGGTTCCGGCTGGCAAATGAGGCCAAAATTACCATCAAGTTCAAGGAATTTAACCCAAAATGGAAATTCAGTGAAAATGGAAGAAACCCCAGATCAAGTTAATAATGTTGGAAGACAATTTCTTGGCAATGAGCAATATTGGAGCAGTGGATCAATGGCATGGTCAGATCTTTCTGGTTTCAGTTCTTCATCTTCAACAAGAAACAACCAATTATAG | 1008 | 51.29 | MNFSSIPSYLDPSNWQQVTHQVGSSSSTGVGSQLPPPPPPPPPPPPPHGVGGTGSIRPGSMSERARMANIPMPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKGRGSKSPPVSSDRQQTSGSGNSSSSAIASNNSGGLSPQIPSALRFMAPLHQQLTDFDIGGFNYGGGGGGLSAPATAAADLNFQLGNTNLLAAGGTSIGSLLGFDQQWRLQQQAPPQFPFLSGLDPFDVGGDGSGWQMRPKLPSSSRNLTQNGNSVKMEETPDQVNNVGRQFLGNEQYWSSGSMAWSDLSGFSSSSSTRNNQL | 335 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2229298 | 2230758 | + | Hsped.05g01800.1 | Hepe05g0180 | 569445 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe05g0180 | 335 | ProSiteProfiles | Zinc finger Dof-type profile. | 77 | 131 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Hepe05g0180 | 335 | MobiDBLite | consensus disorder prediction | 136 | 166 | - | - | |
Hepe05g0180 | 335 | MobiDBLite | consensus disorder prediction | 271 | 295 | - | - | |
Hepe05g0180 | 335 | Pfam | Dof domain, zinc finger | 76 | 131 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Hepe05g0180 | 335 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 37 | 46 | - | - | |
Hepe05g0180 | 335 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Hepe05g0180 | 335 | ProSitePatterns | Zinc finger Dof-type signature. | 79 | 115 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Hepe05g0180 | 335 | MobiDBLite | consensus disorder prediction | 264 | 295 | - | - | |
Hepe05g0180 | 335 | MobiDBLite | consensus disorder prediction | 118 | 166 | - | - | |
Hepe05g0180 | 335 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
Hepe05g0180 | 335 | MobiDBLite | consensus disorder prediction | 32 | 51 | - | - | |
Hepe05g0180 | 335 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 64 | 161 | IPR045174 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe02g3032 | Hepe-Chr2:79457090 | Hepe05g0180 | Hepe-Chr5:2229298 | 5.51e-50 | dispersed | |
Hepe05g0180 | Hepe-Chr5:2229298 | Hepe08g0855 | Hepe-Chr8:7793042 | 2.32e-34 | dispersed | |
Hepe01g0799 | Hepe-Chr1:71828666 | Hepe05g0180 | Hepe-Chr5:2229298 | 3.16e-44 | wgd | |
Hepe10g1221 | Hepe-Chr10:47279715 | Hepe05g0180 | Hepe-Chr5:2229298 | 2.48e-57 | wgd | |
Hepe04g0864 | Hepe-Chr4:62891157 | Hepe05g0180 | Hepe-Chr5:2229298 | 4.25e-46 | wgd | |
Hepe05g0180 | Hepe-Chr5:2229298 | Hepe08g0797 | Hepe-Chr8:7152359 | 9.12e-47 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55542 | PF02701 | zf-Dof | 9.40E-32 | No_clan | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe05g0180 | - | - | - | 0.0 |