Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0180 ATGAATTTTTCCTCCATTCCTTCTTATCTTGATCCTTCCAACTGGCAGCAAGTCACTCATCAAGTGGGAAGTAGTAGTAGCACTGGAGTTGGATCTCAGCTTCCACCTCCTCCGCCTCCACCTCCACCGCCACCTCCGCCTCATGGCGTCGGTGGTACCGGTTCGATCCGGCCTGGTTCAATGTCCGAGCGCGCTCGAATGGCGAATATTCCGATGCCTGAGGCAGCATTGAAATGTCCAAGATGTGAATCAACCAACACTAAGTTTTGCTACTTCAACAATTACAGCCTCACTCAGCCTCGCCATTTCTGCAAGACTTGTCGAAGGTACTGGACGAGGGGTGGCGCTCTGAGAAGCGTCCCGGTCGGGGGCGGGTGCCGGAGGAACAAGAGAAGCAAAGGGAGAGGTTCGAAATCGCCGCCAGTCAGCTCGGACCGGCAACAAACGAGCGGTTCGGGCAATTCGTCGTCAAGTGCAATAGCTTCCAACAATAGTGGAGGCCTTTCACCACAGATCCCATCTGCACTCCGCTTCATGGCTCCTCTCCACCAACAACTCACTGACTTCGACATCGGAGGCTTCAACTACGGCGGTGGAGGTGGCGGTCTCTCAGCCCCGGCCACCGCCGCCGCCGACCTGAATTTCCAATTGGGAAACACTAATTTATTAGCAGCTGGAGGAACAAGCATTGGATCTCTCTTGGGATTTGACCAACAATGGAGGCTCCAGCAACAAGCTCCTCCTCAATTTCCCTTCTTGTCCGGTCTCGACCCTTTCGACGTCGGCGGAGACGGTTCCGGCTGGCAAATGAGGCCAAAATTACCATCAAGTTCAAGGAATTTAACCCAAAATGGAAATTCAGTGAAAATGGAAGAAACCCCAGATCAAGTTAATAATGTTGGAAGACAATTTCTTGGCAATGAGCAATATTGGAGCAGTGGATCAATGGCATGGTCAGATCTTTCTGGTTTCAGTTCTTCATCTTCAACAAGAAACAACCAATTATAG 1008 51.29 MNFSSIPSYLDPSNWQQVTHQVGSSSSTGVGSQLPPPPPPPPPPPPPHGVGGTGSIRPGSMSERARMANIPMPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKGRGSKSPPVSSDRQQTSGSGNSSSSAIASNNSGGLSPQIPSALRFMAPLHQQLTDFDIGGFNYGGGGGGLSAPATAAADLNFQLGNTNLLAAGGTSIGSLLGFDQQWRLQQQAPPQFPFLSGLDPFDVGGDGSGWQMRPKLPSSSRNLTQNGNSVKMEETPDQVNNVGRQFLGNEQYWSSGSMAWSDLSGFSSSSSTRNNQL 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2229298 2230758 + Hsped.05g01800.1 Hepe05g0180 569445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0180 335 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe05g0180 335 MobiDBLite consensus disorder prediction 136 166 - -
Hepe05g0180 335 MobiDBLite consensus disorder prediction 271 295 - -
Hepe05g0180 335 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe05g0180 335 SUPERFAMILY Formin homology 2 domain (FH2 domain) 37 46 - -
Hepe05g0180 335 MobiDBLite consensus disorder prediction 1 31 - -
Hepe05g0180 335 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe05g0180 335 MobiDBLite consensus disorder prediction 264 295 - -
Hepe05g0180 335 MobiDBLite consensus disorder prediction 118 166 - -
Hepe05g0180 335 MobiDBLite consensus disorder prediction 1 60 - -
Hepe05g0180 335 MobiDBLite consensus disorder prediction 32 51 - -
Hepe05g0180 335 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 64 161 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0180 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3032 Hepe-Chr2:79457090 Hepe05g0180 Hepe-Chr5:2229298 5.51e-50 dispersed
Hepe05g0180 Hepe-Chr5:2229298 Hepe08g0855 Hepe-Chr8:7793042 2.32e-34 dispersed
Hepe01g0799 Hepe-Chr1:71828666 Hepe05g0180 Hepe-Chr5:2229298 3.16e-44 wgd
Hepe10g1221 Hepe-Chr10:47279715 Hepe05g0180 Hepe-Chr5:2229298 2.48e-57 wgd
Hepe04g0864 Hepe-Chr4:62891157 Hepe05g0180 Hepe-Chr5:2229298 4.25e-46 wgd
Hepe05g0180 Hepe-Chr5:2229298 Hepe08g0797 Hepe-Chr8:7152359 9.12e-47 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g1473 . 12 153 C2C2-Dof Transcription Factor Family AT1G51700 55.3 3.0e-37 152.1
Hepe04g1916 . 6 160 C2C2-Dof Transcription Factor Family AT1G29160 54.7 1.7e-42 169.5
Hepe07g1867 . 58 180 C2C2-Dof Transcription Factor Family AT1G29160 68.8 1.7e-42 169.5
Hepe07g1867 . 58 180 C2C2-Dof Transcription Factor Family AT2G34140 64.3 9.8e-40 160.2
Hepe04g1916 . 6 160 C2C2-Dof Transcription Factor Family AT2G34140 52.4 1.8e-38 156.0
Hepe05g0180 . 1 129 C2C2-Dof Transcription Factor Family AT2G37590 67.4 4.5e-41 165.6
Hepe02g3032 . 1 131 C2C2-Dof Transcription Factor Family AT2G37590 64.7 1.4e-37 154.1
Hepe06g1450 . 1 94 C2C2-Dof Transcription Factor Family AT4G24060 78.8 5.0e-43 172.2
Hepe08g0797 . 1 127 C2C2-Dof Transcription Factor Family AT5G02460 57.7 1.9e-38 157.1
Hepe10g1221 . 57 138 C2C2-Dof Transcription Factor Family AT5G02460 85.4 4.3e-38 156.0
Hepe04g0864 . 34 126 C2C2-Dof Transcription Factor Family AT3G55370 72.3 1.3e-36 151.0
Hepe09g0293 . 24 327 C2C2-Dof Transcription Factor Family AT5G60850 50.5 2.2e-42 169.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004817 1 1 1 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55542 PF02701 zf-Dof 9.40E-32 No_clan Hepe TF