Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0180 ATGAATTTTTCCTCCATTCCTTCTTATCTTGATCCTTCCAACTGGCAGCAAGTCACTCATCAAGTGGGAAGTAGTAGTAGCACTGGAGTTGGATCTCAGCTTCCACCTCCTCCGCCTCCACCTCCACCGCCACCTCCGCCTCATGGCGTCGGTGGTACCGGTTCGATCCGGCCTGGTTCAATGTCCGAGCGCGCTCGAATGGCGAATATTCCGATGCCTGAGGCAGCATTGAAATGTCCAAGATGTGAATCAACCAACACTAAGTTTTGCTACTTCAACAATTACAGCCTCACTCAGCCTCGCCATTTCTGCAAGACTTGTCGAAGGTACTGGACGAGGGGTGGCGCTCTGAGAAGCGTCCCGGTCGGGGGCGGGTGCCGGAGGAACAAGAGAAGCAAAGGGAGAGGTTCGAAATCGCCGCCAGTCAGCTCGGACCGGCAACAAACGAGCGGTTCGGGCAATTCGTCGTCAAGTGCAATAGCTTCCAACAATAGTGGAGGCCTTTCACCACAGATCCCATCTGCACTCCGCTTCATGGCTCCTCTCCACCAACAACTCACTGACTTCGACATCGGAGGCTTCAACTACGGCGGTGGAGGTGGCGGTCTCTCAGCCCCGGCCACCGCCGCCGCCGACCTGAATTTCCAATTGGGAAACACTAATTTATTAGCAGCTGGAGGAACAAGCATTGGATCTCTCTTGGGATTTGACCAACAATGGAGGCTCCAGCAACAAGCTCCTCCTCAATTTCCCTTCTTGTCCGGTCTCGACCCTTTCGACGTCGGCGGAGACGGTTCCGGCTGGCAAATGAGGCCAAAATTACCATCAAGTTCAAGGAATTTAACCCAAAATGGAAATTCAGTGAAAATGGAAGAAACCCCAGATCAAGTTAATAATGTTGGAAGACAATTTCTTGGCAATGAGCAATATTGGAGCAGTGGATCAATGGCATGGTCAGATCTTTCTGGTTTCAGTTCTTCATCTTCAACAAGAAACAACCAATTATAG 1008 51.29 MNFSSIPSYLDPSNWQQVTHQVGSSSSTGVGSQLPPPPPPPPPPPPPHGVGGTGSIRPGSMSERARMANIPMPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKGRGSKSPPVSSDRQQTSGSGNSSSSAIASNNSGGLSPQIPSALRFMAPLHQQLTDFDIGGFNYGGGGGGLSAPATAAADLNFQLGNTNLLAAGGTSIGSLLGFDQQWRLQQQAPPQFPFLSGLDPFDVGGDGSGWQMRPKLPSSSRNLTQNGNSVKMEETPDQVNNVGRQFLGNEQYWSSGSMAWSDLSGFSSSSSTRNNQL 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2229298 2230758 + Hsped.05g01800.1 Hepe05g0180 569445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0180 335 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe05g0180 335 MobiDBLite consensus disorder prediction 136 166 - -
Hepe05g0180 335 MobiDBLite consensus disorder prediction 271 295 - -
Hepe05g0180 335 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe05g0180 335 SUPERFAMILY Formin homology 2 domain (FH2 domain) 37 46 - -
Hepe05g0180 335 MobiDBLite consensus disorder prediction 1 31 - -
Hepe05g0180 335 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe05g0180 335 MobiDBLite consensus disorder prediction 264 295 - -
Hepe05g0180 335 MobiDBLite consensus disorder prediction 118 166 - -
Hepe05g0180 335 MobiDBLite consensus disorder prediction 1 60 - -
Hepe05g0180 335 MobiDBLite consensus disorder prediction 32 51 - -
Hepe05g0180 335 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 64 161 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3032 Hepe-Chr2:79457090 Hepe05g0180 Hepe-Chr5:2229298 5.51e-50 dispersed
Hepe05g0180 Hepe-Chr5:2229298 Hepe08g0855 Hepe-Chr8:7793042 2.32e-34 dispersed
Hepe01g0799 Hepe-Chr1:71828666 Hepe05g0180 Hepe-Chr5:2229298 3.16e-44 wgd
Hepe10g1221 Hepe-Chr10:47279715 Hepe05g0180 Hepe-Chr5:2229298 2.48e-57 wgd
Hepe04g0864 Hepe-Chr4:62891157 Hepe05g0180 Hepe-Chr5:2229298 4.25e-46 wgd
Hepe05g0180 Hepe-Chr5:2229298 Hepe08g0797 Hepe-Chr8:7152359 9.12e-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55542 PF02701 zf-Dof 9.40E-32 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0180 - - - 0.0