Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0189 ATGGGAGAAGAAGCAGCTGGTTTTGCTGCAGTTACGAATGAGCCACTGGGGAAGGCGAGCGGTTCGAGTACTGAATTGAAGCGAGACCATCAGTGTCTTGATGAAGATACGGAACCTGAGTTGTTTCACAACAAGAAGCAGGCTAAAGAAGTGTCGAATGAAGATGTTCGTTCGGAAGTTTCGAATCCTGTAATTTCTCCGAAAGGGAATCATTCTCAGGATATTACTAGCCAACCAGACGAGCAGGAAAATACCAACCGAGTCGAGCGTGGGGACTTTACTTCAGCTTGTTCGGGGAATTCAAGCTCGGAGGATATCTCAAGCGATGGAGTGCGTTGCCAGAACGACATGTCTCGAAATGTCGCCCCCGATATGTGTGATGTTGATGAGGTCTCCCGGTTTGTGCTTGAAATTCCTAAGCATGCTAGTTCAACTGGAATTAGGAAAATTACCTTCAAATTCAGCAAAAAGAAGGACACCAATGGCGTATCAATGTCAGCTGACAAAGTTCACTCTTATGGAAACTCTGACAAGGACTGTAAACCAGAACCATCGTCGGTGGATGATGCTTATACGGAGACATCTGCACATAGCTGGGAAGGCTGTGCTGAGAGCAGCAGGTTTCCTTTAAGCTCCAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCAAACAATTACCCATCAAATGTTAAAAAGCTGCTGTCGACTGGTATACTTGACGGAGCTCGAGTCAAGTATATATCTACGACGAGTGAGATGAAGCTAAATGGTATTATAAATGGCGGAGGTTATATGTGCGGATGTTCAATATGCAATTTTACGGCTATTCTCAGTGCATATGAGTTTGAGCAGCATGCTGGTTTCAAGACCAGACATCCAAACAATCATATATACCTGGAGAATGGGAGGCCAATTTATAGTGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTAAGGAAGTAGCGGGTTCATCTGTTAACATGGATTCATTCGAGGCTTGGAAAGCAAGTTTCCACCAGAACAGTGCAAGTATTGACGTGGAAAATGGTGATGTGAAGCTTCCTAAATTGTCACATCCCATTGAGAGACCATACCCTAATTTATCCAACCCAGTCATGCAACAGAAGAAAACGGCAGAAAAAGGCACCAAAAGAAGGGATAATGATCTTCACAGGCTACTTTTCATGCCAAATGGGCTTCCAGATGGAGCTGAGCTGGCATACTTTGTCAAAGGACAGAGAATACTTGGAGGCTACAAGCAAGGAAATGGTATACTCTGTAGTCACTGTAATCGAGAGATTAGCCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCCTACCGTCACATTTATACTACAAATGGACTTACACTTCATGATATTGCCATTTCCTTGGCTAGTGGTCAAAAACTTACCACAGGAGACAGTGATGATATGTGTGCTTCATGTGGCAATGGAGGGGATTTGATTTTCTGTGATCGCTGCCCTCGAGCTTTCCATACAGGCTGCCTGCATCTACAGAATGTTCCGGAAGGAGTTTGGTGTTGCCCAAACTGTAGAGATAAAGTGGGTTCCAGTTTGAAGGCTGCTTCTGGAAGTTCTTTGGGTTTTTCAAAACCAATTGTATTTAGGTTGACACGAGTTGTTAAAGCACCTGAGTATGAAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCTGCCAAATTTGATGATCGAACTGTACTGCTATGTGATCAATGCGAAAGAGAATTCCATGTAGGCTGTCTGCGGGATAGTGGATTATGTGATCTGAAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAATATCCATGTGGCCCTTCAGAATACAGTTTTGAACGGGGCACAGATCATTCCAGATCCATTATCAGATTTAATAATTCGAAAGCACGTTGGAAAAGGATTATTAGTTGATGAAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCAACACAGAAGATCTTCCATTTCTTTCAAGGGCGACTGCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATACCTGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTTGGAGGAATGTATTGTGTTGTTCTAATTGTGAGGTCAATAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCCGAGCTTCCTATTGTTGCCACAAGTAGAGAGCATCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACCTTGTACTCCCTGCAGCCGAGGATGCTGAATCAATTTGGACCAAGAAATTGGGTTTCAGAAAGATGAGTGAAGAACAATTGATGAAGTATATGAGGGAGGTCCAGCTGACGATCTTCAACGGAACATCGATGCTAGAGAAGGTGGTGCAGCAGGTCGACAATATGTCATAA 2538 43.26 MGEEAAGFAAVTNEPLGKASGSSTELKRDHQCLDEDTEPELFHNKKQAKEVSNEDVRSEVSNPVISPKGNHSQDITSQPDEQENTNRVERGDFTSACSGNSSSEDISSDGVRCQNDMSRNVAPDMCDVDEVSRFVLEIPKHASSTGIRKITFKFSKKKDTNGVSMSADKVHSYGNSDKDCKPEPSSVDDAYTETSAHSWEGCAESSRFPLSSNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYISTTSEMKLNGIINGGGYMCGCSICNFTAILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSSVNMDSFEAWKASFHQNSASIDVENGDVKLPKLSHPIERPYPNLSNPVMQQKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCASCGNGGDLIFCDRCPRAFHTGCLHLQNVPEGVWCCPNCRDKVGSSLKAASGSSLGFSKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLNGAQIIPDPLSDLIIRKHVGKGLLVDEALNDVRWQILSGKSRNTEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQLMKYMREVQLTIFNGTSMLEKVVQQVDNMS 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2366188 2374548 + Hsped.05g01890.1 Hepe05g0189 569454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0189 845 ProSiteProfiles Zinc finger PHD-type profile. 569 630 IPR019787 -
Hepe05g0189 845 MobiDBLite consensus disorder prediction 172 186 - -
Hepe05g0189 845 PANTHER AUTOIMMUNE REGULATOR 27 840 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Hepe05g0189 845 FunFam PHD zinc finger protein 570 630 - -
Hepe05g0189 845 SUPERFAMILY FYVE/PHD zinc finger 570 625 IPR011011 -
Hepe05g0189 845 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 481 549 IPR013083 -
Hepe05g0189 845 MobiDBLite consensus disorder prediction 57 82 - -
Hepe05g0189 845 MobiDBLite consensus disorder prediction 1 112 - -
Hepe05g0189 845 MobiDBLite consensus disorder prediction 89 112 - -
Hepe05g0189 845 FunFam PHD finger family protein 670 837 - -
Hepe05g0189 845 MobiDBLite consensus disorder prediction 164 187 - -
Hepe05g0189 845 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 727 815 IPR016181 -
Hepe05g0189 845 ProSitePatterns Zinc finger PHD-type signature. 572 627 IPR019786 -
Hepe05g0189 845 ProSiteProfiles Zinc finger PHD-type profile. 490 535 IPR019787 -
Hepe05g0189 845 ProSitePatterns Zinc finger PHD-type signature. 493 532 IPR019786 -
Hepe05g0189 845 SMART PHD_3 492 533 IPR001965 -
Hepe05g0189 845 SMART PHD_3 571 628 IPR001965 -
Hepe05g0189 845 Gene3D - 671 840 - -
Hepe05g0189 845 SUPERFAMILY FYVE/PHD zinc finger 480 534 IPR011011 -
Hepe05g0189 845 MobiDBLite consensus disorder prediction 371 393 - -
Hepe05g0189 845 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 570 630 IPR013083 -
Hepe05g0189 845 MobiDBLite consensus disorder prediction 23 56 - -
Hepe05g0189 845 Pfam PHD-finger 493 532 IPR019787 -
Hepe05g0189 845 Pfam Tify domain binding domain 259 313 IPR032308 -
Hepe05g0189 845 Pfam Tify domain binding domain 426 475 IPR032308 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0189 Hepe-Chr5:2366188 Hepe08g0937 Hepe-Chr8:8619712 1.31e-182 dispersed
Hepe01g0809 Hepe-Chr1:71937427 Hepe05g0189 Hepe-Chr5:2366188 2.27e-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55543 PF16135 TDBD 5.40E-12 No_clan Hepe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0189 - - - 0.0