Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0189 ATGGGAGAAGAAGCAGCTGGTTTTGCTGCAGTTACGAATGAGCCACTGGGGAAGGCGAGCGGTTCGAGTACTGAATTGAAGCGAGACCATCAGTGTCTTGATGAAGATACGGAACCTGAGTTGTTTCACAACAAGAAGCAGGCTAAAGAAGTGTCGAATGAAGATGTTCGTTCGGAAGTTTCGAATCCTGTAATTTCTCCGAAAGGGAATCATTCTCAGGATATTACTAGCCAACCAGACGAGCAGGAAAATACCAACCGAGTCGAGCGTGGGGACTTTACTTCAGCTTGTTCGGGGAATTCAAGCTCGGAGGATATCTCAAGCGATGGAGTGCGTTGCCAGAACGACATGTCTCGAAATGTCGCCCCCGATATGTGTGATGTTGATGAGGTCTCCCGGTTTGTGCTTGAAATTCCTAAGCATGCTAGTTCAACTGGAATTAGGAAAATTACCTTCAAATTCAGCAAAAAGAAGGACACCAATGGCGTATCAATGTCAGCTGACAAAGTTCACTCTTATGGAAACTCTGACAAGGACTGTAAACCAGAACCATCGTCGGTGGATGATGCTTATACGGAGACATCTGCACATAGCTGGGAAGGCTGTGCTGAGAGCAGCAGGTTTCCTTTAAGCTCCAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCAAACAATTACCCATCAAATGTTAAAAAGCTGCTGTCGACTGGTATACTTGACGGAGCTCGAGTCAAGTATATATCTACGACGAGTGAGATGAAGCTAAATGGTATTATAAATGGCGGAGGTTATATGTGCGGATGTTCAATATGCAATTTTACGGCTATTCTCAGTGCATATGAGTTTGAGCAGCATGCTGGTTTCAAGACCAGACATCCAAACAATCATATATACCTGGAGAATGGGAGGCCAATTTATAGTGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTAAGGAAGTAGCGGGTTCATCTGTTAACATGGATTCATTCGAGGCTTGGAAAGCAAGTTTCCACCAGAACAGTGCAAGTATTGACGTGGAAAATGGTGATGTGAAGCTTCCTAAATTGTCACATCCCATTGAGAGACCATACCCTAATTTATCCAACCCAGTCATGCAACAGAAGAAAACGGCAGAAAAAGGCACCAAAAGAAGGGATAATGATCTTCACAGGCTACTTTTCATGCCAAATGGGCTTCCAGATGGAGCTGAGCTGGCATACTTTGTCAAAGGACAGAGAATACTTGGAGGCTACAAGCAAGGAAATGGTATACTCTGTAGTCACTGTAATCGAGAGATTAGCCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCCTACCGTCACATTTATACTACAAATGGACTTACACTTCATGATATTGCCATTTCCTTGGCTAGTGGTCAAAAACTTACCACAGGAGACAGTGATGATATGTGTGCTTCATGTGGCAATGGAGGGGATTTGATTTTCTGTGATCGCTGCCCTCGAGCTTTCCATACAGGCTGCCTGCATCTACAGAATGTTCCGGAAGGAGTTTGGTGTTGCCCAAACTGTAGAGATAAAGTGGGTTCCAGTTTGAAGGCTGCTTCTGGAAGTTCTTTGGGTTTTTCAAAACCAATTGTATTTAGGTTGACACGAGTTGTTAAAGCACCTGAGTATGAAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCTGCCAAATTTGATGATCGAACTGTACTGCTATGTGATCAATGCGAAAGAGAATTCCATGTAGGCTGTCTGCGGGATAGTGGATTATGTGATCTGAAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAATATCCATGTGGCCCTTCAGAATACAGTTTTGAACGGGGCACAGATCATTCCAGATCCATTATCAGATTTAATAATTCGAAAGCACGTTGGAAAAGGATTATTAGTTGATGAAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCAACACAGAAGATCTTCCATTTCTTTCAAGGGCGACTGCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATACCTGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTTGGAGGAATGTATTGTGTTGTTCTAATTGTGAGGTCAATAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCCGAGCTTCCTATTGTTGCCACAAGTAGAGAGCATCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACCTTGTACTCCCTGCAGCCGAGGATGCTGAATCAATTTGGACCAAGAAATTGGGTTTCAGAAAGATGAGTGAAGAACAATTGATGAAGTATATGAGGGAGGTCCAGCTGACGATCTTCAACGGAACATCGATGCTAGAGAAGGTGGTGCAGCAGGTCGACAATATGTCATAA 2538 43.26 MGEEAAGFAAVTNEPLGKASGSSTELKRDHQCLDEDTEPELFHNKKQAKEVSNEDVRSEVSNPVISPKGNHSQDITSQPDEQENTNRVERGDFTSACSGNSSSEDISSDGVRCQNDMSRNVAPDMCDVDEVSRFVLEIPKHASSTGIRKITFKFSKKKDTNGVSMSADKVHSYGNSDKDCKPEPSSVDDAYTETSAHSWEGCAESSRFPLSSNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYISTTSEMKLNGIINGGGYMCGCSICNFTAILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSSVNMDSFEAWKASFHQNSASIDVENGDVKLPKLSHPIERPYPNLSNPVMQQKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCASCGNGGDLIFCDRCPRAFHTGCLHLQNVPEGVWCCPNCRDKVGSSLKAASGSSLGFSKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLNGAQIIPDPLSDLIIRKHVGKGLLVDEALNDVRWQILSGKSRNTEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQLMKYMREVQLTIFNGTSMLEKVVQQVDNMS 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2366188 2374548 + Hsped.05g01890.1 Hepe05g0189 569454

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0189 845 ProSiteProfiles Zinc finger PHD-type profile. 569 630 IPR019787 -
Hepe05g0189 845 MobiDBLite consensus disorder prediction 172 186 - -
Hepe05g0189 845 PANTHER AUTOIMMUNE REGULATOR 27 840 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Hepe05g0189 845 FunFam PHD zinc finger protein 570 630 - -
Hepe05g0189 845 SUPERFAMILY FYVE/PHD zinc finger 570 625 IPR011011 -
Hepe05g0189 845 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 481 549 IPR013083 -
Hepe05g0189 845 MobiDBLite consensus disorder prediction 57 82 - -
Hepe05g0189 845 MobiDBLite consensus disorder prediction 1 112 - -
Hepe05g0189 845 MobiDBLite consensus disorder prediction 89 112 - -
Hepe05g0189 845 FunFam PHD finger family protein 670 837 - -
Hepe05g0189 845 MobiDBLite consensus disorder prediction 164 187 - -
Hepe05g0189 845 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 727 815 IPR016181 -
Hepe05g0189 845 ProSitePatterns Zinc finger PHD-type signature. 572 627 IPR019786 -
Hepe05g0189 845 ProSiteProfiles Zinc finger PHD-type profile. 490 535 IPR019787 -
Hepe05g0189 845 ProSitePatterns Zinc finger PHD-type signature. 493 532 IPR019786 -
Hepe05g0189 845 SMART PHD_3 492 533 IPR001965 -
Hepe05g0189 845 SMART PHD_3 571 628 IPR001965 -
Hepe05g0189 845 Gene3D - 671 840 - -
Hepe05g0189 845 SUPERFAMILY FYVE/PHD zinc finger 480 534 IPR011011 -
Hepe05g0189 845 MobiDBLite consensus disorder prediction 371 393 - -
Hepe05g0189 845 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 570 630 IPR013083 -
Hepe05g0189 845 MobiDBLite consensus disorder prediction 23 56 - -
Hepe05g0189 845 Pfam PHD-finger 493 532 IPR019787 -
Hepe05g0189 845 Pfam Tify domain binding domain 259 313 IPR032308 -
Hepe05g0189 845 Pfam Tify domain binding domain 426 475 IPR032308 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0189 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0189 Hepe-Chr5:2366188 Hepe08g0937 Hepe-Chr8:8619712 1.31e-182 dispersed
Hepe01g0809 Hepe-Chr1:71937427 Hepe05g0189 Hepe-Chr5:2366188 2.27e-43 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe05g0307 . 202 923 PHD Transcription Factor Family AT2G36720 54.6 1.1e-228 790.4
Hepe05g0189 . 1 838 PHD Transcription Factor Family AT3G53680 53.0 8.9e-251 863.6
Hepe01g0809 . 434 563 PHD Transcription Factor Family AT3G53680 54.6 1.6e-37 155.2
Hepe08g0810 . 312 450 PHD Transcription Factor Family AT3G53680 51.8 2.7e-37 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005462 1 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55543 PF16135 TDBD 5.40E-12 No_clan Hepe TR