Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0212 ATGGAGAAGGAACTCCTCAAAAAAAAGATCTCAAACAACCGGAACAAAATTGCAGGTCCACAACATTTCAAGGTAAATTGGGATCCACATAAAAAGCTTCATATCTCCCTCTCAAGTGAAGAGCATTCACGAGATCCCATAATGGAAAAATTAGAAACCTCCACTGTCATCATCGCCGCCCTCTCTACCCTCTCTCCGCCGCATCTCTCCGATCTCTCCCACTCAATCTTCTCTGACATATACCTCCGCCGCCGCCGCCTCACCTTCATCCTCTCCTCTCCGACCCTCTTCTCCCTCACTCTCCGCCACCTCAATTCCCTCTCCCTCTCCGACAAGTCTCTCCTCATTGCCCGCTTCCTTCTCTCCGCCCTCCGCCGCCTCTCCCGTCCCTTCCAGCCGCCATCCAAGTCCCTCCCCCACCACCCTTCCACCGTCTCCCCTCAAGACCTGGACGCTGCTGTCCTCCTCCTCTTCCTCTGCGAGGTCCGGCAACACAATCCAGCCGCCCTCCAAACTCCGATCACCAAATGGCGTGCGACCCTCTGTAAAATCTACTCTGATTCCCTCTTGACGATCTCCGGCATCGCAACCGGTGGCGGTGTCGGGGTTTTGATTCCGTACATAGAGACGGTGGCGAGGTGCTGGAAGTTCGTGGGGTTTGTTGGGATCAGTTGCGACGGTGGGAAGGCCCGGAGAGAGGTGGCGGCGTCTCCAGTGGCGGTGGTGAAGCTGCCGTCGGTGGTGGTGGACGGCGGCGGTGCGGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGAACGAAGGGAGAGACGCGTGTGAATTGCCTTGCGAACATTTATTCCATTGGCTCTGTATTTTGCCATGGCTAAGGAAGAGGAACACGTGTCCATGTTGCAGGTTTCAGCTTCCCACTGATGATATCTTCGGCGAGATCCAACGGCTCTGGGAGGTCCTCGTCAAAGTGGGCTCCATCTGA 975 55.59 MEKELLKKKISNNRNKIAGPQHFKVNWDPHKKLHISLSSEEHSRDPIMEKLETSTVIIAALSTLSPPHLSDLSHSIFSDIYLRRRRLTFILSSPTLFSLTLRHLNSLSLSDKSLLIARFLLSALRRLSRPFQPPSKSLPHHPSTVSPQDLDAAVLLLFLCEVRQHNPAALQTPITKWRATLCKIYSDSLLTISGIATGGGVGVLIPYIETVARCWKFVGFVGISCDGGKARREVAASPVAVVKLPSVVVDGGGAAVECVICKEEMNEGRDACELPCEHLFHWLCILPWLRKRNTCPCCRFQLPTDDIFGEIQRLWEVLVKVGSI 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2580165 2582633 + Hsped.05g02120.1 Hepe05g0212 569477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0212 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 229 304 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Hepe05g0212 324 SMART ring_2 258 298 IPR001841 -
Hepe05g0212 324 CDD RING-H2_PA-TM-RING 257 299 - -
Hepe05g0212 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 228 305 IPR013083 -
Hepe05g0212 324 ProSiteProfiles Zinc finger RING-type profile. 258 299 IPR001841 -
Hepe05g0212 324 Pfam Ring finger domain 257 299 IPR001841 -
Hepe05g0212 324 SUPERFAMILY RING/U-box 252 305 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0212 Hepe-Chr5:2580165 Hepe07g2324 Hepe-Chr7:67573710 6.66e-14 dispersed
Hepe05g0212 Hepe-Chr5:2580165 Hepe05g0158 Hepe-Chr5:1978002 6.74e-15 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0212 - - - 0.0