Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0230 ATGGTCTTTGCAGAACGTGGGGGAGCTTCAAACCCAATGCTGGATCTTAACCTCGAAGTTGCTACCTCCGATTCGGTTGAGATTGTTGCTGAGAAGTTTCTGCAGTTTCCGGCGAACAGAATGGAAAGCGCCGGTAGCTTTAACTCTTCCTCTGTCGTTAATGGCGATCCTTCTGCTAGCACCACCGGCGATGAGGACTCCTCTTCCAACGCCGACGAAGCTTTCCAGTTCACTTTCGGTAAGGATTACGCAGTTCATACGGTGGAATCACTCTGTATTTCCGATGACCACCAAGACCAGACGATGGAGCTCTTCCCGTTAACTGGCGGATTCTGTTCTGGTTTGAGTCCTCCGAAGCTGTGGCCGGCGGTTTCTCCGCCGGAATTTGGTTATTGTGGTGGCGTAACGGCGCAGCAGCAGCATCAGCCGATGAGGAAGAATCGGCGAGGTCCAAGGTCTCGAAGTTCGCAGTATCGTGGAGTTACTTTTTATCGAAGAACAGGAAGATGGGAATCGCATATTTGGGACTGCGGCAAACAAGTTTATTTGGGTGGTTTCGATACTGCTCATGCTGCTGCTAGAGCATATGATCGAGCTGCGATCAAGTTTCGTGGGATCGATGCAGATATCAATTTCAATGTCAGTGATTATGATGAAGAGATTAAGCAGATGAGTAATTACACCAAGGAAGAATTTGTTCATATTCTCCGTCGCCATAGCACTGGATTTTCGAGGGGGAGCTCGAAATACAGAGGAGTCACTCTGCATAAATGTGGGCGATGGGAAGCTCGGATGGGCCAGTTTCTGGGCAAGAAGTACATATATCTTGGTCTATTTGATAATGAAATTGAGGCTGCAAGGGCATATGACAAGGCAGCCTTAAGATGTAATGGTAAGGAGGCTGTTACAAACTTTGAACCAAGTTCTTATGTGGCTGAGATGGCTTCTGAGACTGACACTGGAGAGAACAACCAGATTCTTGACCTTAACTTGGGAATTGCTCCTCCACATCTCTCTGATGCCCAAAGTGAGAGCATTGGCATGTTTGGTAATGGTTTTCATCACGGCTCGCACGACGTGCTCGTCGGTAGAAGTATGACGCTTGAGAACTCTGTTTCAGCAGCAATTAGATCATCTCAGCCATATGGCTTTGCAGTGCCTTCCAATTACCATTCTTCTTGGAATGTTTCAAATTCCAGTTTCTTTCCCAACTCCAGGGAAAGAGCAACAGAGATGAGGATGGGGGTTGGGTCTTGGGAATGGCAAATCAATGGCCAAAACCCAAGTGGAACAGCCTCTGTGCCACACTTCTCTGCTGCAGCATCATCAGGATTCCCTTCTTCTTCTTCTTCTTTTTCAACTGCCATTTCATCATCTGCTGTTGGTGAAATCCATTTCCCAGCAATCTTCCATCATCACCAAGCTTCACCACAACCCATCTCTAATGGCAACAACAACTTTTCCAACTTCTACTGTAGGAGTTGA 1485 47.21 MVFAERGGASNPMLDLNLEVATSDSVEIVAEKFLQFPANRMESAGSFNSSSVVNGDPSASTTGDEDSSSNADEAFQFTFGKDYAVHTVESLCISDDHQDQTMELFPLTGGFCSGLSPPKLWPAVSPPEFGYCGGVTAQQQHQPMRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADINFNVSDYDEEIKQMSNYTKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDNEIEAARAYDKAALRCNGKEAVTNFEPSSYVAEMASETDTGENNQILDLNLGIAPPHLSDAQSESIGMFGNGFHHGSHDVLVGRSMTLENSVSAAIRSSQPYGFAVPSNYHSSWNVSNSSFFPNSRERATEMRMGVGSWEWQINGQNPSGTASVPHFSAAASSGFPSSSSSFSTAISSSAVGEIHFPAIFHHHQASPQPISNGNNNFSNFYCRS 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2708197 2711919 + Hsped.05g02300.1 Hepe05g0230 569495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0230 494 SMART rav1_2 249 312 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g0230 494 SMART rav1_2 157 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g0230 494 ProSiteProfiles AP2/ERF domain profile. 249 306 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g0230 494 MobiDBLite consensus disorder prediction 45 70 - -
Hepe05g0230 494 SUPERFAMILY DNA-binding domain 156 215 IPR016177 GO:0003677(InterPro)
Hepe05g0230 494 PRINTS Ethylene responsive element binding protein signature 288 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g0230 494 PRINTS Ethylene responsive element binding protein signature 250 261 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g0230 494 CDD AP2 156 215 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g0230 494 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g0230 494 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 75 335 - -
Hepe05g0230 494 FunFam AP2-like ethylene-responsive transcription factor 156 215 - -
Hepe05g0230 494 CDD AP2 248 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g0230 494 Gene3D AP2/ERF domain 248 307 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g0230 494 Gene3D AP2/ERF domain 156 215 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g0230 494 MobiDBLite consensus disorder prediction 137 157 - -
Hepe05g0230 494 Pfam AP2 domain 157 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g0230 494 Pfam AP2 domain 248 297 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g0230 494 SUPERFAMILY DNA-binding domain 248 307 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0230 Hepe-Chr5:2708197 Hepe10g1430 Hepe-Chr10:50968401 2.28e-104 dispersed
Hepe01g0877 Hepe-Chr1:72899616 Hepe05g0230 Hepe-Chr5:2708197 3.93e-72 wgd
Hepe04g0911 Hepe-Chr4:63387122 Hepe05g0230 Hepe-Chr5:2708197 1.34e-139 wgd
Hepe05g0230 Hepe-Chr5:2708197 Hepe08g0848 Hepe-Chr8:7688552 1.88e-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55546 PF00847 AP2 4.50E-09 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0230 K09284 - csv:101211242 736.102