Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe05g0230 | ATGGTCTTTGCAGAACGTGGGGGAGCTTCAAACCCAATGCTGGATCTTAACCTCGAAGTTGCTACCTCCGATTCGGTTGAGATTGTTGCTGAGAAGTTTCTGCAGTTTCCGGCGAACAGAATGGAAAGCGCCGGTAGCTTTAACTCTTCCTCTGTCGTTAATGGCGATCCTTCTGCTAGCACCACCGGCGATGAGGACTCCTCTTCCAACGCCGACGAAGCTTTCCAGTTCACTTTCGGTAAGGATTACGCAGTTCATACGGTGGAATCACTCTGTATTTCCGATGACCACCAAGACCAGACGATGGAGCTCTTCCCGTTAACTGGCGGATTCTGTTCTGGTTTGAGTCCTCCGAAGCTGTGGCCGGCGGTTTCTCCGCCGGAATTTGGTTATTGTGGTGGCGTAACGGCGCAGCAGCAGCATCAGCCGATGAGGAAGAATCGGCGAGGTCCAAGGTCTCGAAGTTCGCAGTATCGTGGAGTTACTTTTTATCGAAGAACAGGAAGATGGGAATCGCATATTTGGGACTGCGGCAAACAAGTTTATTTGGGTGGTTTCGATACTGCTCATGCTGCTGCTAGAGCATATGATCGAGCTGCGATCAAGTTTCGTGGGATCGATGCAGATATCAATTTCAATGTCAGTGATTATGATGAAGAGATTAAGCAGATGAGTAATTACACCAAGGAAGAATTTGTTCATATTCTCCGTCGCCATAGCACTGGATTTTCGAGGGGGAGCTCGAAATACAGAGGAGTCACTCTGCATAAATGTGGGCGATGGGAAGCTCGGATGGGCCAGTTTCTGGGCAAGAAGTACATATATCTTGGTCTATTTGATAATGAAATTGAGGCTGCAAGGGCATATGACAAGGCAGCCTTAAGATGTAATGGTAAGGAGGCTGTTACAAACTTTGAACCAAGTTCTTATGTGGCTGAGATGGCTTCTGAGACTGACACTGGAGAGAACAACCAGATTCTTGACCTTAACTTGGGAATTGCTCCTCCACATCTCTCTGATGCCCAAAGTGAGAGCATTGGCATGTTTGGTAATGGTTTTCATCACGGCTCGCACGACGTGCTCGTCGGTAGAAGTATGACGCTTGAGAACTCTGTTTCAGCAGCAATTAGATCATCTCAGCCATATGGCTTTGCAGTGCCTTCCAATTACCATTCTTCTTGGAATGTTTCAAATTCCAGTTTCTTTCCCAACTCCAGGGAAAGAGCAACAGAGATGAGGATGGGGGTTGGGTCTTGGGAATGGCAAATCAATGGCCAAAACCCAAGTGGAACAGCCTCTGTGCCACACTTCTCTGCTGCAGCATCATCAGGATTCCCTTCTTCTTCTTCTTCTTTTTCAACTGCCATTTCATCATCTGCTGTTGGTGAAATCCATTTCCCAGCAATCTTCCATCATCACCAAGCTTCACCACAACCCATCTCTAATGGCAACAACAACTTTTCCAACTTCTACTGTAGGAGTTGA | 1485 | 47.21 | MVFAERGGASNPMLDLNLEVATSDSVEIVAEKFLQFPANRMESAGSFNSSSVVNGDPSASTTGDEDSSSNADEAFQFTFGKDYAVHTVESLCISDDHQDQTMELFPLTGGFCSGLSPPKLWPAVSPPEFGYCGGVTAQQQHQPMRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADINFNVSDYDEEIKQMSNYTKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDNEIEAARAYDKAALRCNGKEAVTNFEPSSYVAEMASETDTGENNQILDLNLGIAPPHLSDAQSESIGMFGNGFHHGSHDVLVGRSMTLENSVSAAIRSSQPYGFAVPSNYHSSWNVSNSSFFPNSRERATEMRMGVGSWEWQINGQNPSGTASVPHFSAAASSGFPSSSSSFSTAISSSAVGEIHFPAIFHHHQASPQPISNGNNNFSNFYCRS | 494 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2708197 | 2711919 | + | Hsped.05g02300.1 | Hepe05g0230 | 569495 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe05g0230 | 494 | SMART | rav1_2 | 249 | 312 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe05g0230 | 494 | SMART | rav1_2 | 157 | 219 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe05g0230 | 494 | ProSiteProfiles | AP2/ERF domain profile. | 249 | 306 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe05g0230 | 494 | MobiDBLite | consensus disorder prediction | 45 | 70 | - | - | |
Hepe05g0230 | 494 | SUPERFAMILY | DNA-binding domain | 156 | 215 | IPR016177 | GO:0003677(InterPro) | |
Hepe05g0230 | 494 | PRINTS | Ethylene responsive element binding protein signature | 288 | 308 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe05g0230 | 494 | PRINTS | Ethylene responsive element binding protein signature | 250 | 261 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe05g0230 | 494 | CDD | AP2 | 156 | 215 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe05g0230 | 494 | ProSiteProfiles | AP2/ERF domain profile. | 157 | 213 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe05g0230 | 494 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 75 | 335 | - | - | |
Hepe05g0230 | 494 | FunFam | AP2-like ethylene-responsive transcription factor | 156 | 215 | - | - | |
Hepe05g0230 | 494 | CDD | AP2 | 248 | 308 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe05g0230 | 494 | Gene3D | AP2/ERF domain | 248 | 307 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe05g0230 | 494 | Gene3D | AP2/ERF domain | 156 | 215 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe05g0230 | 494 | MobiDBLite | consensus disorder prediction | 137 | 157 | - | - | |
Hepe05g0230 | 494 | Pfam | AP2 domain | 157 | 205 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe05g0230 | 494 | Pfam | AP2 domain | 248 | 297 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe05g0230 | 494 | SUPERFAMILY | DNA-binding domain | 248 | 307 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe05g0230 | Hepe-Chr5:2708197 | Hepe10g1430 | Hepe-Chr10:50968401 | 2.28e-104 | dispersed | |
Hepe01g0877 | Hepe-Chr1:72899616 | Hepe05g0230 | Hepe-Chr5:2708197 | 3.93e-72 | wgd | |
Hepe04g0911 | Hepe-Chr4:63387122 | Hepe05g0230 | Hepe-Chr5:2708197 | 1.34e-139 | wgd | |
Hepe05g0230 | Hepe-Chr5:2708197 | Hepe08g0848 | Hepe-Chr8:7688552 | 1.88e-135 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55546 | PF00847 | AP2 | 4.50E-09 | CL0081 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe05g0230 | K09284 | - | csv:101211242 | 736.102 |