Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0232 ATGGCTTTTCTCTTTTTTTTCCCTCGAATTTCTCCTCCATCTTCCATTTTTGCTTCTGGGTTTCTTCCGGAGCTTGCGTTTATGGGTTCTGTTCATGGGTTTTGTTTCTGGGTTTCTTTTGGAGCTTGCGTTTCTGGGGTTTTGGCGAAGATGGCTGATGGTCCGGCGAGTCCCGGCGGAGGAAGCCATGAGAGTGGCGAGCAGAGTCCGAGGTCTTGTGTTCGTGAACAGGATAGGTTTCTTCCGATTGCGAATATTAGCAGGATCATGAAGAAGGCTCTTCCTGCTAATGGAAAAATTGCTAAGGATGCTAAGGAGACCGTACAAGAATGTGTATCCGAGTTCATCAGTTTTATTACCAGCGAGGCTAGTGATAAATGTCAAAGAGAGAAACGGAAAACGATTAATGGAGATGATTTACTTTGGGCCATGGCTACTCTTGGATTTGAGGATTATATGGATCCGCTGAAAACCTACTTGACGAAATACAGAGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGTGATGCGTCCTCTAAGAAAGAAGCTCATCCAACCCCTATTTCTCAGATGGCTCATCAAGAGTCGTTTTCTCAAGGAGTTAATTATGCAGCTTCTCAATCACAAGCCCAGCATCTGATGATCCCTATGCCTATGCAAGGCACCGACTAA 672 45.54 MAFLFFFPRISPPSSIFASGFLPELAFMGSVHGFCFWVSFGACVSGVLAKMADGPASPGGGSHESGEQSPRSCVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYMDPLKTYLTKYREGDTKGSAKGGDASSKKEAHPTPISQMAHQESFSQGVNYAASQSQAQHLMIPMPMQGTD 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2736226 2739509 + Hsped.05g02320.1 Hepe05g0232 569497

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0232 223 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 80 144 IPR003958 -
Hepe05g0232 223 Gene3D Histone, subunit A 68 213 IPR009072 GO:0046982(InterPro)
Hepe05g0232 223 PRINTS CCAAT-binding transcription factor subunit A signature 108 126 - -
Hepe05g0232 223 PRINTS CCAAT-binding transcription factor subunit A signature 127 145 - -
Hepe05g0232 223 PRINTS CCAAT-binding transcription factor subunit A signature 146 164 - -
Hepe05g0232 223 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 63 204 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Hepe05g0232 223 SUPERFAMILY Histone-fold 77 179 IPR009072 GO:0046982(InterPro)
Hepe05g0232 223 MobiDBLite consensus disorder prediction 183 199 - -
Hepe05g0232 223 MobiDBLite consensus disorder prediction 167 199 - -
Hepe05g0232 223 FunFam Nuclear transcription factor Y subunit B-3 69 194 - -
Hepe05g0232 223 ProSitePatterns NF-YB/HAP3 subunit signature. 111 127 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0232 K08065 - - csv:101212699 324.709
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0232 Hepe-Chr5:2736226 Hepe06g0617 Hepe-Chr6:45893488 4.24e-50 dispersed
Hepe08g0381 Hepe-Chr8:3406020 Hepe05g0232 Hepe-Chr5:2736226 4.97e-53 transposed
Hepe01g0881 Hepe-Chr1:72932981 Hepe05g0232 Hepe-Chr5:2736226 1.22e-73 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe06g0593 . 13 174 CCAAT-HAP3 Transcription Factor Family AT5G47670 61.1 4.6e-48 188.3
Hepe06g0594 . 69 175 CCAAT-HAP3 Transcription Factor Family AT5G47670 82.2 6.0e-48 188.0
Hepe08g0381 . 6 119 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.5 1.3e-37 153.7
Hepe06g0593 . 76 215 CCAAT-HAP3 Transcription Factor Family AT1G21970 67.8 1.9e-49 193.0
Hepe06g0594 . 77 216 CCAAT-HAP3 Transcription Factor Family AT1G21970 66.4 7.2e-49 191.0
Hepe08g0381 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 83.8 5.1e-54 207.6
Hepe06g0617 . 19 122 CCAAT-HAP3 Transcription Factor Family AT4G14540 81.7 3.3e-45 178.3
Hepe01g0881 . 105 223 CCAAT-HAP3 Transcription Factor Family AT4G14540 69.7 6.2e-44 174.1
Hepe05g0232 . 75 181 CCAAT-HAP3 Transcription Factor Family AT4G14540 78.5 2.4e-43 172.2
Hepe03g1918 . 49 144 CCAAT-HAP3 Transcription Factor Family AT4G14540 74.0 8.7e-38 153.7
Hepe01g0881 . 92 208 CCAAT-HAP3 Transcription Factor Family AT2G38880 82.1 5.5e-50 194.1
Hepe05g0232 . 51 165 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 8.8e-48 186.8
Hepe08g0381 . 20 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 80.9 5.5e-42 167.5
Hepe06g0617 . 19 112 CCAAT-HAP3 Transcription Factor Family AT2G38880 78.7 8.0e-41 163.7
Hepe03g1918 . 45 155 CCAAT-HAP3 Transcription Factor Family AT2G38880 65.8 4.4e-39 157.9
Hepe03g1918 . 47 144 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 8.1e-44 173.7
Hepe06g0617 . 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.0 1.6e-39 159.5
Hepe08g0381 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.0 4.6e-39 157.9
Hepe05g0232 . 51 223 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.1 3.9e-60 228.0
Hepe01g0881 . 98 225 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.6 2.7e-53 205.3
Hepe08g0381 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.9 1.9e-43 172.6
Hepe06g0617 . 16 115 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.0 1.5e-40 162.9
Hepe03g1918 . 48 150 CCAAT-HAP3 Transcription Factor Family AT2G37060 69.9 3.5e-37 151.8
Hepe08g0381 . 22 117 CCAAT-HAP3 Transcription Factor Family AT2G13570 85.4 6.3e-44 174.5
Hepe06g0617 . 21 116 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.2 2.3e-41 166.0
Hepe05g0232 . 54 170 CCAAT-HAP3 Transcription Factor Family AT2G13570 70.1 2.9e-41 165.6
Hepe01g0881 . 118 212 CCAAT-HAP3 Transcription Factor Family AT2G13570 73.7 2.8e-39 159.1
Hepe03g1918 . 49 149 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.3 1.4e-38 156.8
Hepe08g0381 . 1 121 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.4 6.2e-51 197.6
Hepe06g0617 . 15 119 CCAAT-HAP3 Transcription Factor Family AT5G47640 85.7 7.1e-47 184.1
Hepe01g0881 . 118 228 CCAAT-HAP3 Transcription Factor Family AT5G47640 70.9 4.7e-43 171.4
Hepe05g0232 . 61 174 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.1 1.5e-41 166.4
Hepe03g1918 . 49 145 CCAAT-HAP3 Transcription Factor Family AT5G47640 77.3 5.4e-39 157.9
Hepe05g0232 . 62 218 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.0 4.1e-57 218.0
Hepe01g0881 . 103 225 CCAAT-HAP3 Transcription Factor Family AT3G53340 80.8 1.6e-53 206.1
Hepe08g0381 . 6 116 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.1 3.4e-43 171.8
Hepe06g0617 . 16 115 CCAAT-HAP3 Transcription Factor Family AT3G53340 77.0 3.2e-41 165.2
Hepe03g1918 . 48 150 CCAAT-HAP3 Transcription Factor Family AT3G53340 70.9 7.3e-38 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55547 PF00808 CBFD_NFYB_HMF 1.30E-27 CL0012 Hepe TF