Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0235 ATGGGCCGGCGGTCCGGCCCAGGCAACCTTAGACTAACCGCTACGTTTCTGAAGTTTTATCTTTCCCGCCAAAAATTGGACGGACACTTCGTTGAGATGAAAATGTCCGGAGATCCTACCGGAATGGAGCAAGCGTTTTCAGACTTCGACATCGCCGGAGATATCTTGGATTTGTACTTCCCCCCAACTGTCTTCACTGTCGAAAATGGATGGCTTAAGCTCATTTCTCAGCTCGTTTTCTTCTTTTCTTCTCCGGCAGGTCGACATCTCGCTTCACAGGCTATCGATGATGGTCGTGGCATCTTTATTTTGTCAATTGACTTTCAACAGTTCCGGAAGATTTGCGATCAACATGAATTTTACCTAATGTTAGAGGAAAATCCTAAAGTTGCTCTCAAATGTATGAGTGCTGCACTTCACCAGCAGGTAATTAGGACCAAATGGGCGCACAATTTAGAAGATGTCGCAAAAATTCTAGTCCGGTTGCACAACTATTCAGAATCTATGCTTGCTTTGAAGAACTTGAAGGCAGCATCTATTGACAAGCTTGTATCAGTGCGTGGTACTGTTGTTAAAGTTAGCACTGTCAAGCCTTTGGTGGTGCAAATGAGCTTTGATTGTGCAAAGTGTAAAAGCAATATTACACGCATCTTTCCTGATGGTAAGTTTTCACCTCCATTGTTTTGTGAGTTGGATGGGTGTAAAAGCAAAACATTCAATCCCATTCGATCTACTGCAGAAGCAATCGACTTTCAAAAAATAAGGTTGCAAGAACTCACTAAATCTGATGACCATGAAGAAGGCAGGGTGCCTCGAACTGTAGAATGTGAACTGACTGAAGATCTTGTTGACGCATGCATCCCTGGAGATGTTGTCACTGTTACTGGAATTATAAGAGTTATTAATAATTACATGGATATTGGAGGAGGAAAATCGAAGAGCAAAAGTCAAGGATTTTACTATTTGTATCTGGAGGCTGTTTCAATAAAAAATTCCAAGTCACAATCTACACCTGAGGAGTTGCAAGATTCTGACTCTAATGCAAGAGCAACCGAGTTGCTTGATTTATTCTCATTTTCCCCAAGAGATTTGGAATTTATTGTGAAATTCTCTGGGGAATATGGTTCAGATGTCTTCCGTCAAATAATTCAATCTATATGTCCATCCATCTATGGACATGAACTTGTTAAAGCGGGAATAACACTAGCACTATTTGGTGGTGTACGAAAGCATTCAAAAGACCAGAATAAAGTTCCTGTTAGAGGGGATCTTCATGTCATAGTTGTTGGTGATCCTGGACTTGGCAAAAGTCAACTACTGCAAGCGGCTGCAGCTATTTCTCCACGTGGCATTTATGTTTGTGGTAATGCAACAACCAAGGCAGGCTTAACTGTAGCTGTTGTGAGGGATTCCATGACAAATGACTATGCTTTTGAGGCTGGGGCTATGGTACTTGCAGATGGTGGATTATGCTGTATAGACGAGTTTGATAAAATGTCAGCAGAACATCAGGCCCTACTGGAAGCCATGGAACAACAATGTGTATCCATTGCAAAAGCTGGACTGGTAGCAAGTCTATCAGCACGCACTTCTGTTTTAGCTGCAGCTAACCCTGTTGGTGGTCATTACAACCGGGCAAAAACTGTGAATGAAAACTTGAAGATGAGTGCCGCTCTTCTCTCGAGATTTGACTTAGTTTTTATATTGCTGGATAAACCTGACGAACTTTTGGATAAGAGAGTTTCGGAGCACATCATGTCGCTTCATTCTGGATATGGGGAACGCGCCTCTGCAGCAAAAAGACTACGAAAAGATATATCTCCTTTGGCTTTAAAGAACGTAGCAATGGAGAATTGTGGAAAAGGAGATGCTTGTTCAAAACGCGAGTCTTTAGTTTCAAGACTGAGATTGGACCCAGCGAAAGATGGCGATTTTGTACCATTACCTGGCCAACTTCTTCGCAAATATATAGCCTATGCAAGAACTTTTGTCTTCCCTAGGATGTCAAAGCCCGCAGCAGACATCTTGCAGAAATTTTACTTACAGCTGCGTGACCGGAATACATCAGCGGATGGTACACCAATTACAGCAAGGCAACTGGAAAGTCTGGTGAGGCTGGCAGCAGCTCGAGCACGGGTAGACCTCAGGGAAGAAATTACAGTACAAGATGCCATGGATGTGGTAGAAATAATGAAGGAATCCCTTTATGACAAGTATGTAGATGAACATGGGGTCTTGGATTTTGGTCGAAGTGGGGGAATGAGTCAACAGAAAGAAGCCAAGCGATTTCTGAGTGCACTCAACAAGCAATCAGAGTTGCAGCAGAAAGATTGTTTCTCAATCTCGGAAATATATAGCTTGGCAGATAGGATTGGTCTACGAGTGCCTGATATAGATACTTTCATAGAAAATCTTAACAGTGTTGGATATCTGCTTAAAAAGGGGCCAAAGACATACCAGGTGCTGTCCTCATCGTACACCAGTCAATCAACAAGGTCAAGAGGATAA 2508 42.54 MGRRSGPGNLRLTATFLKFYLSRQKLDGHFVEMKMSGDPTGMEQAFSDFDIAGDILDLYFPPTVFTVENGWLKLISQLVFFFSSPAGRHLASQAIDDGRGIFILSIDFQQFRKICDQHEFYLMLEENPKVALKCMSAALHQQVIRTKWAHNLEDVAKILVRLHNYSESMLALKNLKAASIDKLVSVRGTVVKVSTVKPLVVQMSFDCAKCKSNITRIFPDGKFSPPLFCELDGCKSKTFNPIRSTAEAIDFQKIRLQELTKSDDHEEGRVPRTVECELTEDLVDACIPGDVVTVTGIIRVINNYMDIGGGKSKSKSQGFYYLYLEAVSIKNSKSQSTPEELQDSDSNARATELLDLFSFSPRDLEFIVKFSGEYGSDVFRQIIQSICPSIYGHELVKAGITLALFGGVRKHSKDQNKVPVRGDLHVIVVGDPGLGKSQLLQAAAAISPRGIYVCGNATTKAGLTVAVVRDSMTNDYAFEAGAMVLADGGLCCIDEFDKMSAEHQALLEAMEQQCVSIAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYGERASAAKRLRKDISPLALKNVAMENCGKGDACSKRESLVSRLRLDPAKDGDFVPLPGQLLRKYIAYARTFVFPRMSKPAADILQKFYLQLRDRNTSADGTPITARQLESLVRLAAARARVDLREEITVQDAMDVVEIMKESLYDKYVDEHGVLDFGRSGGMSQQKEAKRFLSALNKQSELQQKDCFSISEIYSLADRIGLRVPDIDTFIENLNSVGYLLKKGPKTYQVLSSSYTSQSTRSRG 835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2784606 2794500 - Hsped.05g02350.1 Hepe05g0235 569500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0235 835 SUPERFAMILY Nucleic acid-binding proteins 99 302 IPR012340 -
Hepe05g0235 835 Gene3D - 172 302 IPR012340 -
Hepe05g0235 835 Pfam MCM P-loop domain 376 589 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Hepe05g0235 835 CDD MCM8_WHD 757 822 - -
Hepe05g0235 835 PRINTS Mini-chromosome maintenance (MCM) protein family signature 508 521 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Hepe05g0235 835 PRINTS Mini-chromosome maintenance (MCM) protein family signature 421 436 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Hepe05g0235 835 PRINTS Mini-chromosome maintenance (MCM) protein family signature 481 495 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Hepe05g0235 835 PRINTS Mini-chromosome maintenance (MCM) protein family signature 532 544 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Hepe05g0235 835 PRINTS Mini-chromosome maintenance (MCM) protein family signature 559 567 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Hepe05g0235 835 SMART AAA_5 422 574 IPR003593 GO:0016887(InterPro)
Hepe05g0235 835 CDD MCM8 382 734 - -
Hepe05g0235 835 Coils Coil 493 513 - -
Hepe05g0235 835 FunFam DNA helicase MCM8 isoform X1 199 250 - -
Hepe05g0235 835 ProSiteProfiles MCM family domain profile. 378 585 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Hepe05g0235 835 SMART mcm 168 736 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Hepe05g0235 835 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 103 820 IPR031327 GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)
Hepe05g0235 835 Gene3D - 356 744 IPR027417 -
Hepe05g0235 835 Pfam MCM OB domain 172 301 IPR033762 -
Hepe05g0235 835 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 388 741 IPR027417 -
Hepe05g0235 835 Gene3D - 199 249 - -
Hepe05g0235 835 Pfam MCM AAA-lid domain 652 735 IPR041562 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0235 Hepe-Chr5:2784606 Hepe05g1030 Hepe-Chr5:48747756 6.60e-79 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0235 K10737 - csv:101211972 1421.37