Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0251 ATGTCAAGTAATCCCTTTTCTGTTCTTTCTTCCACTACTCCCACTGGCTTTGCTCAGCAACAGCCAGATGCAAACCCTAATATACCTAACCCTAAACCGAAAGCCTCTGCCGCTGCGGCGAAGAAGAAGAGAAACCTCCCCGGAAACCCAGATCCAGATGCCGAGGTTATTGCTATGTCGCCGAAATCGCTCATGGCGACGAATAGATTCCTATGTGAAATTTGCAACAAGGGGTTTCAGAGAGATCAGAACCTGCAGCTTCACCGGCGAGGGCACAACCTCCCGTGGAAACTGCGACAACGAACGAGCAAGGAGCCGATCAAGAAGAAGGTGTATATTTGCCCGGAGAAGACGTGCGTCCACCACGATCCGTCGCGAGCCCTCGGCGACCTCACCGGGATAAAGAAACATTTCAGTAGGAAACACGGCGAGAAGAAGTGGAAATGTGAAAAGTGTTCTAAGAAATATGCTGTTCAGTCTGATTGGAAAGCTCACTCCAAAACTTGTGGCACAAGAGAGTATAAGTGTGATTGTGGAACCCTTTTCTCCAGGAAAGACAGCTTCATAACCCACAGAGCATTTTGTGATGCTTTAGCTGAAGAAAGTGCAAGAATCACAACAGTTTCAGCAACAAATATTCTGAATAATCTCAGAAATAATAATGATCATTCAATTCTTCTTCATCAACAAGATCATTCACAACAATCTTTGATTGATCATCATCAAAACAACAATCTTCAATCTCTTGGAGATGTTTCTGGTCTTTCCCAATTCAGTCATTCAGATCAATTTTTGAGAGATTTTGAAGAACATCAACAGAAAAACAGATCTCCATTGTCACTTTGGTTGAACCAAGCTTCAGCTGAAACTGCAATGAACAACAACAATAATAACAACATGATTTCCAACTTTTTTGGAGCTTCTTCTTCCTCTTCCAATCTTTTTGGATCGATAAACGAAACCGGGCTTCCGACAATGTTGCCGGTGATTGATGAGAAGGGAGATGTTGATAATAAGGGAAGTTTGTCGAAAGCTACCGCGTTGTTGTCGGGTCAATCTTCTCACTCTGTTGTTTCTTCTTCTCCGATGTCGGCCACCGCCCTTCTGCAAAAAGCTGCTCTTATGGGCTCAACTAGAAGCAGCAACAATAATAATTCGCCGCTCTTTGGAGCCGGCGCTTTCGGAGTAATGAGCTCTTCGTCTTCGTCTTCCAATGCAGTGAGCTTGAACTCTCTTAATAAATCTAGAAGCTTGACAATGGCAGATTCGGTGCAGATGATCGGTAACAACTCCGACTTGAGCTCGAATTGTCTCAGCCAACTTCTGATACCACCCAACGGTAGCAACGGTATGAGAAGTAGCGGTCAAACGAGAGACTTCCTCGGTGTCGGAGGAGGAGAAGCAGCTCGGCCGCCATTCTTCCCACCGGAGCTAGCGAAATTCGCCACCATAAACTCAACAATGGGACTAAGCCAGTTCGCCGCCAACCACTAA 1494 45.38 MSSNPFSVLSSTTPTGFAQQQPDANPNIPNPKPKASAAAAKKKRNLPGNPDPDAEVIAMSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEPIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVSATNILNNLRNNNDHSILLHQQDHSQQSLIDHHQNNNLQSLGDVSGLSQFSHSDQFLRDFEEHQQKNRSPLSLWLNQASAETAMNNNNNNNMISNFFGASSSSSNLFGSINETGLPTMLPVIDEKGDVDNKGSLSKATALLSGQSSHSVVSSSPMSATALLQKAALMGSTRSSNNNNSPLFGAGAFGVMSSSSSSSNAVSLNSLNKSRSLTMADSVQMIGNNSDLSSNCLSQLLIPPNGSNGMRSSGQTRDFLGVGGGEAARPPFFPPELAKFATINSTMGLSQFAANH 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2990693 2993047 + Hsped.05g02510.1 Hepe05g0251 569516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0251 497 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 469 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Hepe05g0251 497 MobiDBLite consensus disorder prediction 1 53 - -
Hepe05g0251 497 Gene3D Classic Zinc Finger 68 168 - -
Hepe05g0251 497 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Hepe05g0251 497 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 108 142 - -
Hepe05g0251 497 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 146 170 - -
Hepe05g0251 497 Pfam Zinc finger, C2H2 type 70 92 IPR013087 -
Hepe05g0251 497 SMART c2h2final6 112 142 IPR013087 -
Hepe05g0251 497 SMART c2h2final6 147 167 IPR013087 -
Hepe05g0251 497 SMART c2h2final6 70 92 IPR013087 -
Hepe05g0251 497 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Hepe05g0251 497 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 173 212 - -
Hepe05g0251 497 FunFam protein indeterminate-domain 12-like 49 118 - -
Hepe05g0251 497 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Hepe05g0251 497 SUPERFAMILY beta-beta-alpha zinc fingers 69 167 IPR036236 -
Hepe05g0251 497 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0251 Hepe-Chr5:2990693 Hepe08g0425 Hepe-Chr8:3743018 2.19e-101 dispersed
Hepe10g1107 Hepe-Chr10:43772864 Hepe05g0251 Hepe-Chr5:2990693 4.24e-109 transposed
Hepe04g0920 Hepe-Chr4:63494671 Hepe05g0251 Hepe-Chr5:2990693 3.01e-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55549 None None None None Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0251 K25870 - csv:101213422 731.095