Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0254 ATGGGTAACATTGGGAGTAACGGTTCGAATGGCCGGAGGAGGCAAGGTGGCCGACGGAGCCATCCTACTCCGCCGCCACCGGCACCCCCACAGCCCGAAATTACAAGTAATCGTTACGTTTTCGCCGCTGCTACGCCGTACCCATCGCAATTCCCGAACCATCCGAATCATCCTCCGCCGTACTACCAGTATCCCGGTTACTTTCCGTCGCCTCCCGGTCCGCCGCCGTCGATGCCGATGCCTTTGCCGGCGCCTTATGACCACCACCACCACCGCGCTGGCCATCCCCACTTGGATCCTGCGCATTGGGTCGGTGGGAGGTACCCTTATGGCCCGCCGATGCCGCCCCAAACGCCCTATGTTGAGCATCAGAAGGCAGTTACGATTCGGAATGATGTTAATCTCAAGAAGGAAAGTCTTAGGGTTGAGCCTGATGAAGAAAACCCCGGCCAGTTTCTTGTTGCTTTCACGTTTGATGCCACCGTCGCTGGGAGTATCACCATCTTCTTCTTCGCAAAAGAAGGCGAAGATTGTAACTTAACACCTGTAAAAGAAGACTCTCTTGAACCAGTGACCGTCCATTTCGAACAAGGCCTCGGACAGAAGTTCAGACAACCGTCTGGAACGGGATTGGATTTCTCAAAGTATGAAGAGTCAGAATTACTGAAAGTAAATGACACGGATGTCTATCCAATAGCTGTAAAAGCCGAGGCTTCCACTGACTGCCAAACTGGCCCAGATGGTACCATGGCACCTGAGACCATGAATTCTCAGATAACCCAAGCAGTGTTTACGAAAGATAAAGGTGACTATCAGGTAAGAGTGTTGAAACAGATCCTGTGGGTGAATGGTATGAGATATGAGCTGCAGGAGATCTATGGAATTGGAAATTCAGTCGAGGACGACGCAGATGGAAATGACCCTGGAAAGGAATGCGTCATTTGCTTGTCAGAACCACGGGATACGACTGTCCTTCCCTGCCGACACATGTGTATGTGTAGTGGTTGTGCTAAGGTGTTGAGGTTCCAGACGAATCGATGCCCGATTTGCAGACAACCGGTGGATAGGCTCTTAGAGATAAGGGTGAGCAATGGACCAGAAGCAGAAGAATAA 1113 51.39 MGNIGSNGSNGRRRQGGRRSHPTPPPPAPPQPEITSNRYVFAAATPYPSQFPNHPNHPPPYYQYPGYFPSPPGPPPSMPMPLPAPYDHHHHRAGHPHLDPAHWVGGRYPYGPPMPPQTPYVEHQKAVTIRNDVNLKKESLRVEPDEENPGQFLVAFTFDATVAGSITIFFFAKEGEDCNLTPVKEDSLEPVTVHFEQGLGQKFRQPSGTGLDFSKYEESELLKVNDTDVYPIAVKAEASTDCQTGPDGTMAPETMNSQITQAVFTKDKGDYQVRVLKQILWVNGMRYELQEIYGIGNSVEDDADGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVDRLLEIRVSNGPEAEE 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3014666 3018775 - Hsped.05g02540.1 Hepe05g0254 569519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0254 370 SUPERFAMILY RING/U-box 311 357 - -
Hepe05g0254 370 FunFam probable E3 ubiquitin-protein ligase LOG2 296 361 - -
Hepe05g0254 370 Pfam Zinc finger, C3HC4 type (RING finger) 310 356 - -
Hepe05g0254 370 SMART ring_2 312 350 IPR001841 -
Hepe05g0254 370 MobiDBLite consensus disorder prediction 1 38 - -
Hepe05g0254 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 361 IPR013083 -
Hepe05g0254 370 ProSiteProfiles Zinc finger RING-type profile. 312 351 IPR001841 -
Hepe05g0254 370 PANTHER MAHOGUNIN 1 364 IPR045194 GO:0016567(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)
Hepe05g0254 370 CDD mRING-HC-C3HC5_MGRN1-like 310 351 IPR045195 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0254 Hepe-Chr5:3014666 Hepe05g1522 Hepe-Chr5:64727939 1.71e-92 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0254 K27504 - csv:101216150 588.186