Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0292 ATGCCTTTCCAAAGAATAGTTATCGCCGTCGGCCGGCCGGAGGAGGCCACCCATCCCGCCGCCCTGAAGGCCGCCTTGGCTGAGTTCATTTCCACTCTTATCTTCGTTTTCGCCGGCCAAGGTTCCGGTCTGGCTTTCTCTAAGCTGACCAATAATTCTGCCACCACCCCTGCTGGCCTCATCATTGCCTCCTTGGCTCATGGCTTTGCCCTTTTCGTCGGTGTCTCCACCGCCGCCAATATCTCCGGCGGCCACCTTAACCCCGCCGTCACCTTTGGCGCGTTGATCGGCGGTAACATTACTCTCCTCCGCGGTATTCTCTACTGGATCGCCCAGCTCCTCGGCGCTGTCGTCGCTAACTTGTTGCTCCAGTTCGTCATTACCGACGTGGCAATCTCAGGATTGTCGGTATCAGGCGGAGTGGGAATATGGGAGGCATTAGTATTGGAGATCGTAATGACATTCGGATTAGTGTACACCGTGTACGCCACCGCCGTCGACCCCAAGAAGGGTGAATTGGGAGTAATAGCACCCATCGCCATCGGATTCATCGTGGCGGCCAACATTCTCGTCGGCGGCCCATTCACCGGCGCCTCCATGAACCCCGCCGTGGCCTTCGGACCCGCCGTCGTGGCTTGGTCTTGGGCAGGCCACTGGATCTACTGGGCCGGCCCCCTCATCGGCGGCGGCTTGGCCGGAATTGTTTACCACCTCTTCTTCATTGGCTTCACCCACGAGCCCCTACCCACCACCGACTACTAA 762 58.79 MPFQRIVIAVGRPEEATHPAALKAALAEFISTLIFVFAGQGSGLAFSKLTNNSATTPAGLIIASLAHGFALFVGVSTAANISGGHLNPAVTFGALIGGNITLLRGILYWIAQLLGAVVANLLLQFVITDVAISGLSVSGGVGIWEALVLEIVMTFGLVYTVYATAVDPKKGELGVIAPIAIGFIVAANILVGGPFTGASMNPAVAFGPAVVAWSWAGHWIYWAGPLIGGGLAGIVYHLFFIGFTHEPLPTTDY 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3585061 3587279 - Hsped.05g02920.1 Hepe05g0292 569557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0292 253 CDD MIP 23 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe05g0292 253 Gene3D Glycerol uptake facilitator protein. 6 249 IPR023271 -
Hepe05g0292 253 ProSitePatterns MIP family signature. 85 93 IPR022357 -
Hepe05g0292 253 Pfam Major intrinsic protein 16 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe05g0292 253 SUPERFAMILY Aquaporin-like 15 249 IPR023271 -
Hepe05g0292 253 PANTHER AQUAPORIN-8 5 246 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Hepe05g0292 253 PRINTS Major intrinsic protein family signature 149 167 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe05g0292 253 PRINTS Major intrinsic protein family signature 182 204 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe05g0292 253 PRINTS Major intrinsic protein family signature 67 91 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe05g0292 253 PRINTS Major intrinsic protein family signature 104 123 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe05g0292 253 PRINTS Major intrinsic protein family signature 219 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe05g0292 253 PRINTS Major intrinsic protein family signature 23 42 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe05g0292 253 NCBIfam MIP family channel protein 27 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe05g0292 253 FunFam Probable aquaporin TIP1-1 6 253 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0292 Hepe-Chr5:3585061 Hepe06g1681 Hepe-Chr6:67823776 2.91e-96 dispersed
Hepe04g0977 Hepe-Chr4:64216315 Hepe05g0292 Hepe-Chr5:3585061 1.77e-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0292 K09873 - csv:101222386 429.869