Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe05g0296 | ATGCTGGTAACAGATTTGTGCTCTCGGTTCTGTCATCATTTTAAGGGATGTTGTAGTTTTATCCGCCGTGAAGGGAATGAGGTGGCGCATCAGTTAGCAAAACTTGTTTTGACTCTTCGTCAAAGTGTGGTCTGGTTGGAGGATTTTCCTCCTCAGTTCGATAAACAGAAGGGCTTCTTAGGTCGCCGGAAGGACGAAGAAGCTTTGTCAGTTGGAAATCGGAATCCAGTAAAGAAGCAACGCCGGAGTTCGACGGCGATGGACAGAGAGTGGGGGTCGAAGCCGGGAAGTGGAGGAGCCGCCTCTGCACAGAATGAAGCTATCGATCGGAGAGAGCGTCTTCGACGGCTTGCTCTCGAGACCATCGATCTCGCCAAGGATCCCTATTTCATGCGCAATCATCTTGGAAGTTATGAATGTAAGCTTTGCTTGACTCTGCACAACAATGAGGGAAATTACTTGGCGCACACGCAGGGGAAGCGGCATCAGACTAATTTGGCCAAGAGAGCAGCCCGTGAAGCCAAGGAGGCGCCTGCTCAACCTCAACCCCACAAGAGGAAGGTCTCTGTTCGCAAAACAGTTAAAATTGGAAGGCCTGGTTATCGAGTAACAAAGCAATTTGATTCTGAGACAAAGCAGAGATCTCTCCTTTTCCAGATTGAATATCCAGAAATTGAAGATCTAGCAAAGCCAAGACATCGGTTTATGTCATCTTATGAGCAGCGGGTGCAACCTTTTGATAAAAGATACCAATATCTTCTGTTTGCAGCTGAACCGTATGAGATAATTGCATTCAAGGTTCCAAGCACAGAGATTGACAAATCTACGCCAAAATTCTTCTCACACTGGGATCCGGACTCAAAAATGTTCACGTTGCAGTTGTATTTCAAAACCAAGCCACTAGAGGCAAACAAGCCACAAACTGTGCCTGCAGCCAATGGAACGGTGCCATCTGGTGCACCACCGAGGCCACTGCCACCACCACCACAAGCTCCACCACCGCCACCACCTCCACCACAGCAAGGGGCACCACCAAGAGTTCCTCCTCCTCCGATGCCTGGATCCTTGCCACCTCCCCCTTCTATAATGGCAAATGGTCCTCCTAGACCAATGCCTCCTGGTGGGGCTCCGCCCATGCCTCCACCACCGCCAATTGGTAATAACACAATGGCGAATTTCACTCCTGGTACTCAGGTGAATAGACCTCCCATGCCACCTCCCCCACAGGGGTTCCCAGGCCAGGGTCTCCGTCAGCCGCCACCCCCACCACCCAATATGATGGGATAG | 1287 | 50.66 | MLVTDLCSRFCHHFKGCCSFIRREGNEVAHQLAKLVLTLRQSVVWLEDFPPQFDKQKGFLGRRKDEEALSVGNRNPVKKQRRSSTAMDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKTKPLEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSIMANGPPRPMPPGGAPPMPPPPPIGNNTMANFTPGTQVNRPPMPPPPQGFPGQGLRQPPPPPPNMMG | 428 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 3624647 | 3628816 | + | Hsped.05g02960.1 | Hepe05g0296 | 569561 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe05g0296 | 428 | ProSiteProfiles | Zinc finger matrin-type profile. | 138 | 168 | IPR000690 | GO:0003676(InterPro)|GO:0005634(InterPro)|GO:0008270(InterPro) | |
Hepe05g0296 | 428 | Pfam | Zinc-finger of C2H2 type | 138 | 162 | IPR013087 | - | |
Hepe05g0296 | 428 | SUPERFAMILY | beta-beta-alpha zinc fingers | 134 | 169 | IPR036236 | - | |
Hepe05g0296 | 428 | MobiDBLite | consensus disorder prediction | 305 | 428 | - | - | |
Hepe05g0296 | 428 | SMART | ZnF_U1_5 | 135 | 169 | IPR003604 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Hepe05g0296 | 428 | MobiDBLite | consensus disorder prediction | 317 | 388 | - | - | |
Hepe05g0296 | 428 | SMART | CactinC_cactus_3 | 175 | 300 | - | - | |
Hepe05g0296 | 428 | Pfam | Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) | 196 | 290 | IPR031781 | - | |
Hepe05g0296 | 428 | PANTHER | SPLICING FACTOR 3A SUBUNIT 2 | 87 | 426 | IPR052092 | GO:0000245(PANTHER)|GO:0005686(PANTHER)|GO:0071004(PANTHER)|GO:0071013(PANTHER) | |
Hepe05g0296 | 428 | Gene3D | - | 179 | 304 | - | - | |
Hepe05g0296 | 428 | MobiDBLite | consensus disorder prediction | 70 | 107 | - | - | |
Hepe05g0296 | 428 | MobiDBLite | consensus disorder prediction | 399 | 428 | - | - | |
Hepe05g0296 | 428 | FunFam | Splicing factor 3a subunit 2 | 180 | 304 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe05g0296 | Hepe-Chr5:3624647 | Hepe02g1645 | Hepe-Chr2:22203535 | 1.89e-21 | dispersed | |
Hepe05g0296 | Hepe-Chr5:3624647 | Hepe02g1972 | Hepe-Chr2:35554069 | 2.90e-25 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe05g0296 | K12826 | - | csv:101202831 | 466.463 |