Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0296 ATGCTGGTAACAGATTTGTGCTCTCGGTTCTGTCATCATTTTAAGGGATGTTGTAGTTTTATCCGCCGTGAAGGGAATGAGGTGGCGCATCAGTTAGCAAAACTTGTTTTGACTCTTCGTCAAAGTGTGGTCTGGTTGGAGGATTTTCCTCCTCAGTTCGATAAACAGAAGGGCTTCTTAGGTCGCCGGAAGGACGAAGAAGCTTTGTCAGTTGGAAATCGGAATCCAGTAAAGAAGCAACGCCGGAGTTCGACGGCGATGGACAGAGAGTGGGGGTCGAAGCCGGGAAGTGGAGGAGCCGCCTCTGCACAGAATGAAGCTATCGATCGGAGAGAGCGTCTTCGACGGCTTGCTCTCGAGACCATCGATCTCGCCAAGGATCCCTATTTCATGCGCAATCATCTTGGAAGTTATGAATGTAAGCTTTGCTTGACTCTGCACAACAATGAGGGAAATTACTTGGCGCACACGCAGGGGAAGCGGCATCAGACTAATTTGGCCAAGAGAGCAGCCCGTGAAGCCAAGGAGGCGCCTGCTCAACCTCAACCCCACAAGAGGAAGGTCTCTGTTCGCAAAACAGTTAAAATTGGAAGGCCTGGTTATCGAGTAACAAAGCAATTTGATTCTGAGACAAAGCAGAGATCTCTCCTTTTCCAGATTGAATATCCAGAAATTGAAGATCTAGCAAAGCCAAGACATCGGTTTATGTCATCTTATGAGCAGCGGGTGCAACCTTTTGATAAAAGATACCAATATCTTCTGTTTGCAGCTGAACCGTATGAGATAATTGCATTCAAGGTTCCAAGCACAGAGATTGACAAATCTACGCCAAAATTCTTCTCACACTGGGATCCGGACTCAAAAATGTTCACGTTGCAGTTGTATTTCAAAACCAAGCCACTAGAGGCAAACAAGCCACAAACTGTGCCTGCAGCCAATGGAACGGTGCCATCTGGTGCACCACCGAGGCCACTGCCACCACCACCACAAGCTCCACCACCGCCACCACCTCCACCACAGCAAGGGGCACCACCAAGAGTTCCTCCTCCTCCGATGCCTGGATCCTTGCCACCTCCCCCTTCTATAATGGCAAATGGTCCTCCTAGACCAATGCCTCCTGGTGGGGCTCCGCCCATGCCTCCACCACCGCCAATTGGTAATAACACAATGGCGAATTTCACTCCTGGTACTCAGGTGAATAGACCTCCCATGCCACCTCCCCCACAGGGGTTCCCAGGCCAGGGTCTCCGTCAGCCGCCACCCCCACCACCCAATATGATGGGATAG 1287 50.66 MLVTDLCSRFCHHFKGCCSFIRREGNEVAHQLAKLVLTLRQSVVWLEDFPPQFDKQKGFLGRRKDEEALSVGNRNPVKKQRRSSTAMDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKTKPLEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSIMANGPPRPMPPGGAPPMPPPPPIGNNTMANFTPGTQVNRPPMPPPPQGFPGQGLRQPPPPPPNMMG 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3624647 3628816 + Hsped.05g02960.1 Hepe05g0296 569561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0296 428 ProSiteProfiles Zinc finger matrin-type profile. 138 168 IPR000690 GO:0003676(InterPro)|GO:0005634(InterPro)|GO:0008270(InterPro)
Hepe05g0296 428 Pfam Zinc-finger of C2H2 type 138 162 IPR013087 -
Hepe05g0296 428 SUPERFAMILY beta-beta-alpha zinc fingers 134 169 IPR036236 -
Hepe05g0296 428 MobiDBLite consensus disorder prediction 305 428 - -
Hepe05g0296 428 SMART ZnF_U1_5 135 169 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Hepe05g0296 428 MobiDBLite consensus disorder prediction 317 388 - -
Hepe05g0296 428 SMART CactinC_cactus_3 175 300 - -
Hepe05g0296 428 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 196 290 IPR031781 -
Hepe05g0296 428 PANTHER SPLICING FACTOR 3A SUBUNIT 2 87 426 IPR052092 GO:0000245(PANTHER)|GO:0005686(PANTHER)|GO:0071004(PANTHER)|GO:0071013(PANTHER)
Hepe05g0296 428 Gene3D - 179 304 - -
Hepe05g0296 428 MobiDBLite consensus disorder prediction 70 107 - -
Hepe05g0296 428 MobiDBLite consensus disorder prediction 399 428 - -
Hepe05g0296 428 FunFam Splicing factor 3a subunit 2 180 304 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0296 Hepe-Chr5:3624647 Hepe02g1645 Hepe-Chr2:22203535 1.89e-21 dispersed
Hepe05g0296 Hepe-Chr5:3624647 Hepe02g1972 Hepe-Chr2:35554069 2.90e-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0296 K12826 - csv:101202831 466.463