Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0306 ATGAGGATCAAAACTAACTTCTCCTTTTGGCTCTATACTCTTGTCATTGTACTTCTTTCCATCGCCATTGCCCTCCGCTCATTCCCGCTTTCCTTGACCGCCATCGTTGCCGCTGTCGGTCCTCACGACGGGGCTTTCGAGCTCGGCATTTTCAGCAGCCTAGTCAAAGAGAGTGGTTTGGATGATCTCTTGTCTCTTGTAACTCAAATTGTGTCCAAAAACCATCATGGAAGAAGCTGTGATGAGAAGAAATGGAAGTCTGAGTTGATATCTATGTACAATGTTTCACTTACTTTGACAGTTGATTTGAAGGGATGTGCAAATTTTAGCAGTGTGCAAAAAGCAGTGGATGCTGTTCCTGATCATGGCTCTTCAAGGACTCTTATCCTAATTGATTCTGGAATTTACAGGGAGAAGGTGGTGATTGAAGGCAACAAGACAAACTTGATAATTCAAGGTCAGGGTTACCTCAACACTGCAATAGAATGGAATGACACTGCCAATTCCACAGGAGGCACCACTTACAGCTCTTCAGTCTCCATCTTTGCTTCAAATTTCACTGCCTTCAACATCACCTTCAAAAACACAGCTCCTGAGCCAAGTCCAGGGATTGTTGGAGGGCAAGCAGTGGCACTTCGAATAGCAGGAGATGAAGCTGCTTTCTATGGATGTGGATTTTATGGAGCTCAAGACACACTCTATGATGACAAGGGAAGACATTACTTCAAAGAATGTTTCATTCAAGGATCCATTGATTTCATCTTTGGCAATGCTCGATCACTTTACGATGGTTGTAGCATCAAGTCAATAGCAAAGGAAGTGTGTGGTGGTGAAGTGAGTGGAGCCATCACGGCTCAAGGAAGGCAAACAAGCAGTGAGGAAACTGGTTTTGCTTTCATCAACTGCACCATCAATGGCTCTGGGAAGGTGTGGCTCGGCCGCGCTTGGGGTGCCTCGGCCGCCGTCGTCTTCTCCAACACATACATGACCGACGTTGTCTCGGCGGACGGATGGAATGACTGGAGAGACCCTTCAAGAGACCAGAGTGTGTTCTTTGGGGAATATGAATGCTTTGGAGATGGAGCAAATTACAGGTTGAGAGTACCATATGCAAAGCAGCTCAATCAAGTGGAAGCTCAACCTTACTTGGATCTTTCTTATGTTGATGGGAATCAATGGCTTATTTATCAACAAACCACTTTCTCTACAATTAATTTCATATAG 1224 44.93 MRIKTNFSFWLYTLVIVLLSIAIALRSFPLSLTAIVAAVGPHDGAFELGIFSSLVKESGLDDLLSLVTQIVSKNHHGRSCDEKKWKSELISMYNVSLTLTVDLKGCANFSSVQKAVDAVPDHGSSRTLILIDSGIYREKVVIEGNKTNLIIQGQGYLNTAIEWNDTANSTGGTTYSSSVSIFASNFTAFNITFKNTAPEPSPGIVGGQAVALRIAGDEAAFYGCGFYGAQDTLYDDKGRHYFKECFIQGSIDFIFGNARSLYDGCSIKSIAKEVCGGEVSGAITAQGRQTSSEETGFAFINCTINGSGKVWLGRAWGASAAVVFSNTYMTDVVSADGWNDWRDPSRDQSVFFGEYECFGDGANYRLRVPYAKQLNQVEAQPYLDLSYVDGNQWLIYQQTTFSTINFI 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3781638 3785816 - Hsped.05g03060.1 Hepe05g0306 569571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0306 407 FunFam Pectinesterase 93 399 - -
Hepe05g0306 407 Gene3D - 92 403 IPR012334 -
Hepe05g0306 407 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 71 394 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Hepe05g0306 407 ProSitePatterns Pectinesterase signature 2. 247 256 IPR033131 -
Hepe05g0306 407 Pfam Pectinesterase 100 390 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Hepe05g0306 407 SUPERFAMILY Pectin lyase-like 94 402 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0306 Hepe-Chr5:3781638 Hepe09g0821 Hepe-Chr9:8035990 3.75e-96 dispersed
Hepe05g0306 Hepe-Chr5:3781638 Hepe10g0628 Hepe-Chr10:7799371 4.79e-80 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0306 - - - 0.0