Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0307 ATGAAGCGGGAGTTGGCTTTTGCTTTGGAGGTTCAATCTCAGCTTGAGGAGGCTCTCGGTCATACTCGTAGTGAGACTCTAGCTGAGGCGAGGTCTTCGAGTAGTTTTTTAGATTCTACCTGCAAGAGATTTAAAGGGTCTGTTGTCAATGGTTTGATTGTGTATACTAGAGGAAGGAGGTCTCAGATCAATGTGTATAATGGGTTGTCGGAGAATGAGAATAGGAACAAGTGTAATGAGAAAATTCAAACTATAGGTTTGGATAGTAGGACTGAGGAGGTTCATATTCAAACTAATTGTAATTCGATGAGTTTCGTCTGTAAGAAAGAGTCTGATGGAGTGGTGGAGAAATCTGCAGATATGGAAGAAGGGGATGTAGTTATTGCAGAGGCGAGAAACGTTGAGGAGAATTTGCCTGTGTGGGGGGGAGTTAAGCGCTTTACACGCTCCTCGTTAAGACCGAAGGTTGAGCCCGAGGAAGCTACCCCAATTAGAATAGGGTGCTCTGTTAAAGAGGAAGTTATTTCAGATGTCGGCGGGGAAACAAGTGAAGCAGTCAACTCTCTGTCAACTCCGAAGAACAAGTTAGAATTGAAAATGTCGAAAAAGATTTCATTGAATAAGAAGCCAATGACTGTGAAGGAGCTGTTTGATACTGGTTTGCTCGAGGGTGTACCTGTCATCTACATGGGTGTAAAGAAGGCATATGATTATGGTCTGCGCGGTACAATTAAAGATGGCGGGATTCTGTGTACTTGCTCGTCCTGCAATGGATGCAGAGTAATTCCTCCTTCGCAATTTGAGATCCACGCTTGTAAACAATATAAACGAGCAGCTCAGTATATATGTCTTGAGAACGGGAAGAGCCTACTCGACCTGGTGAGAGCATGCAAGGGAAGTAGGCAGACAGTTGAGGCCACTATACAAAGTCTGATTAGTTCTTCTCCAGAAGAAAAATATTTTACGTGTAGAGAGTGTAAAGGATGCTTTCCTTCATCCATTGGACAAGTGGGACCTTTATGCCATTCGTGCGAGGAATCAAAGCGATCTTGCTGTACGCTGGCACTGCCAGCTCCTGCCACTTCGGCAATTGTTAAGAGACTGAGGTCAACAGAGCCAACAACATCAAAATCATCTGGAAGTGTTCCAGTACATATCCCTTCACGATATAAACGTAAATGGGTGATAAAAGCAAAGTCAAAATCGTCCGAATACATTTCCATCTCAAGGTCCCCCAAAAGCGCACCAATGCGCATTCCTTCAAAGAATAAGAGTGCATTGAAGATGAGAAAGAAGTCATTGAAACCAGCCTCAATGTCAAAATCCTCCCAAAGTGCTTCAAAGTGTAGTTCTTCATTAGCTAAAAATCAGTGGAAAATAACAACGAAAGATCAGAGGTTGCATAAGTTGGTTTTTGAGGAAGACGGATTACCTGATGGAACTGAAGTAGCATATTTTGCCAGGGGACAGAAATTGCTCCAGGGTTATAAGAAGGGGTCTGGAATTATATGTTGCTGCTGCAATTGTGTGGTTAGTCCTTCGCAATTTGAAGTTCATGCTGGTTGGTCTTCTCGCAAGAAACCTTATGCATACATTTACACATCAAATGGGGTTTCTCTGCACGAATTAGCAATCTCTCTCTCGAAAGGGCGCAAGTATTCTGCAAAGGATAATGATGACTTATGCATAATATGTCTAGATGGTGGAAATCTTTTGCTTTGTGATGGCTGCCCAAGGGCATTCCACAAAGAATGTGCATCATTATCAAGTATTCCTCGTGGTGATTGGTATTGTAAATTTTGCCAGAATATGTTCCAAAGAGAGAAGTTTGTTGAGCATAATGCCAATGCTGTTGCAGCCGGAAGGGTATATGGAGTTGACCCTATTGAGCAGATAACTCAAAGATGCATTCGAATGGTCAGGAACATTGAAACGGATCTTAGTGGATGTGTGTTATGCCGTGGCTCTGATTTCAGCAAATCAGGTTTTGGACCCCGTACAATTATACTTTGTGATCAGTGTGAGAAGGAATTTCACGTGGGCTGTTTGAAAGATCACAAAATGGCATTTCTTAAGGAATTGCCCAGAGGAAAGTGGTTTTGTAGCACAGATTGTACGAGGATACATTCTGCTCTACAGAAGCTGCTAAGTCGTGGACTAGAGAAGCTTCCAGATTCACTTCTGGATATTGTCAATAGAAAGCTTGGAGAAATTGGTCCAGACAATAAGGCTGATGTTGATGTCAGTTGGAGGCTTATCAGTGGCAAAATTGCTTCACCTGAAACTCGGTTACTACTGTCACAGGCCATTGCCATTTTCCATGATCGCTTTGATCCTATAGTTGATATAACAAGTGGCCGCGATCTTATTCCAGCTATGGTTTATGGAAGGGATGTAGGTGGACAAGAGTTTGGAGGCATGTATTGTGCCATATTAGTTGTCAACTCATATGTTGTATCTGCTGCAATGCTTCGTATTTTTGGGCAAGATATTGCAGAGCTACCGTTGGTTGCGACAAGTAATGGTAACCATGGCAAGGGCTACTTCCAAACATTGTTTTCGTGCATCGAGAGGCTGCTAGCTTTCTTGAAAGTCAAGTGCCTTATTCTCCCGGCTGCTGAAGAAGCTGAATCCATTTGGACTGAAAAATTCGGTTTCAAGAGAATAAAACCGGACCAGCTCAGCAGCTATAGAAGAACTTGCTGCCAGATGGTGAAGTTCAAAGGGACATCCATGCTTCAGAAAACGGTTCCCTCATGTCGGGTCGTAGGCGACGCTCAATTGTGA 2787 43.06 MKRELAFALEVQSQLEEALGHTRSETLAEARSSSSFLDSTCKRFKGSVVNGLIVYTRGRRSQINVYNGLSENENRNKCNEKIQTIGLDSRTEEVHIQTNCNSMSFVCKKESDGVVEKSADMEEGDVVIAEARNVEENLPVWGGVKRFTRSSLRPKVEPEEATPIRIGCSVKEEVISDVGGETSEAVNSLSTPKNKLELKMSKKISLNKKPMTVKELFDTGLLEGVPVIYMGVKKAYDYGLRGTIKDGGILCTCSSCNGCRVIPPSQFEIHACKQYKRAAQYICLENGKSLLDLVRACKGSRQTVEATIQSLISSSPEEKYFTCRECKGCFPSSIGQVGPLCHSCEESKRSCCTLALPAPATSAIVKRLRSTEPTTSKSSGSVPVHIPSRYKRKWVIKAKSKSSEYISISRSPKSAPMRIPSKNKSALKMRKKSLKPASMSKSSQSASKCSSSLAKNQWKITTKDQRLHKLVFEEDGLPDGTEVAYFARGQKLLQGYKKGSGIICCCCNCVVSPSQFEVHAGWSSRKKPYAYIYTSNGVSLHELAISLSKGRKYSAKDNDDLCIICLDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCKFCQNMFQREKFVEHNANAVAAGRVYGVDPIEQITQRCIRMVRNIETDLSGCVLCRGSDFSKSGFGPRTIILCDQCEKEFHVGCLKDHKMAFLKELPRGKWFCSTDCTRIHSALQKLLSRGLEKLPDSLLDIVNRKLGEIGPDNKADVDVSWRLISGKIASPETRLLLSQAIAIFHDRFDPIVDITSGRDLIPAMVYGRDVGGQEFGGMYCAILVVNSYVVSAAMLRIFGQDIAELPLVATSNGNHGKGYFQTLFSCIERLLAFLKVKCLILPAAEEAESIWTEKFGFKRIKPDQLSSYRRTCCQMVKFKGTSMLQKTVPSCRVVGDAQL 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3787210 3796680 - Hsped.05g03070.1 Hepe05g0307 569572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0307 928 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 799 891 IPR016181 -
Hepe05g0307 928 CDD PHD1_AIRE 561 601 - -
Hepe05g0307 928 Pfam Tify domain binding domain 242 297 IPR032308 -
Hepe05g0307 928 Pfam Tify domain binding domain 495 544 IPR032308 -
Hepe05g0307 928 SUPERFAMILY FYVE/PHD zinc finger 550 606 IPR011011 -
Hepe05g0307 928 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 645 708 IPR013083 -
Hepe05g0307 928 PANTHER AUTOIMMUNE REGULATOR 95 920 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Hepe05g0307 928 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 548 625 - -
Hepe05g0307 928 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 646 708 - -
Hepe05g0307 928 ProSitePatterns Zinc finger PHD-type signature. 562 601 IPR019786 -
Hepe05g0307 928 ProSiteProfiles Zinc finger PHD-type profile. 559 604 IPR019787 -
Hepe05g0307 928 SUPERFAMILY FYVE/PHD zinc finger 646 704 IPR011011 -
Hepe05g0307 928 SMART PHD_3 561 602 IPR001965 -
Hepe05g0307 928 SMART PHD_3 649 706 IPR001965 -
Hepe05g0307 928 MobiDBLite consensus disorder prediction 407 448 - -
Hepe05g0307 928 Pfam Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1 558 602 - -
Hepe05g0307 928 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 548 631 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0307 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0307 Hepe-Chr5:3787210 Hepe08g0720 Hepe-Chr8:6497542 3.30e-45 dispersed
Hepe02g0473 Hepe-Chr2:4612678 Hepe05g0307 Hepe-Chr5:3787210 2.60e-06 transposed
Hepe05g0307 Hepe-Chr5:3787210 Hepe08g0937 Hepe-Chr8:8619712 2.73e-266 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe05g0307 . 202 923 PHD Transcription Factor Family AT2G36720 54.6 1.1e-228 790.4
Hepe05g0189 . 1 838 PHD Transcription Factor Family AT3G53680 53.0 8.9e-251 863.6
Hepe01g0809 . 434 563 PHD Transcription Factor Family AT3G53680 54.6 1.6e-37 155.2
Hepe08g0810 . 312 450 PHD Transcription Factor Family AT3G53680 51.8 2.7e-37 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004207 2 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55554 PF16135 TDBD 3.00E-12 No_clan Hepe TR