Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0316 ATGCGGGCCTTTTCTTCCTTGATCTTTGCCTTAGCATCCGTCGTTCTGCCGGCGACGGTGGTCTACTGCGGCTTCCCCGTCCGTCTTCTCTCTCTACAGAGGTCCTTCCCTTCATCTCTCCCTGTCGAACTCGAAACCCTTAGAGCTCGAGACCGACTCAGGCATGCCAGAATCTTGCAAGGTGTGGTCAGTGGCGTCGTCGACTTCTCAGTCGAAGGTTCTTCCGATCCAATGCTCGTCGGGCTTTACTTTACCAAAGTCAAATTGGGCACGCCCCCGAGGGAATTTACGGTGCAAATCGACACTGGAAGCGATATATTGTGGGTTAACTGCAATTCTTGCAATGGCTGCCCCAGATCAAGTGGACTTGGAATTCAACTAAATTTCTTTGATGCATCCAGCTCGTCAAGTTCTTCACTCATTTCCTGCTCTGACCCAGTTTGCAATTCTGCATTCCAAACAACTTCAACTCAGTGTTTATCTCAGAGTAATCAATGCAGTTACACATTTCAGTATGGTGATGGAAGTGGAACATCAGGTTATTATGTATCTGAGTCCATGTACTTCGACATGGTTATGGGACATTCTATGATTGCTAACGCTTCAGCTTCAGTTGTTTTTGGTTGTAGCACCTATCAGTCAGGAGATTTGACTAAATCAGACCATGCAGTAGATGGCATTTTTGGATTTGGCCCTGGAGATTTGTCTGTCATATCACAGTTGTCAGCTCGAGGGATAACCCCGAAAGTATTTTCCCATTGTTTAAAAGGAGAAGGAAATGGTGGTGGTATATTGGTTCTTGGTGAGGTCTTGGAGCCAGGCATTGTGTATAGCCCACTCGTGCCCTCTCAGCCTCACTATAACTTATATCTGCAAAGCATCACTGTCAATGGTCAGACGCTGCCAATTGATCCATCTGTATTTGCAACATCGAACAATCGAGGAACTATTGTAGACTCCGGGACAACATTGGCTTACCTTGTGGAAGAAGCTTATACTCCATTTGTTAGCGCTATAACTGCTGCTGTTTCCCAATCTGTGACTCCTACTATTTCAAAGGGCAACCAGTGTTATCTAGTATCCACCAGCGTAGGCGAGATATTTCCTCTGGTTAGCTTAAACTTCGCAGGCAGTGCATCTATGGTGTTAAAACCCGAAGAATATCTTATGCATCTTGGCTTTTATGATGGTGCTGCATTGTGGTGTATTGGTATTCAGAAAGTTCAGGAAGGAGTAACAATTTTAGGAGATCTTGTTATGAAAGACAAGATATTTGTATATGATTTGGCTCGCCAGCGGATAGGGTGGGCAAACTATGATTGTTCTCAAGCTGTAAATGTATCAGTCACGTCCGGGAAGAACGAGTTTGTCAATGCAGGACAGTTGAGCGTGAGCAGCTCGACCCGAGATAAGCTCCTTCAATCACTAACTATGGAAGCATTAGCTCTGTTAATGAGTAGTTTCATTTTGTTCATCAACTTCAAGTTTCTGTAG 1494 44.78 MRAFSSLIFALASVVLPATVVYCGFPVRLLSLQRSFPSSLPVELETLRARDRLRHARILQGVVSGVVDFSVEGSSDPMLVGLYFTKVKLGTPPREFTVQIDTGSDILWVNCNSCNGCPRSSGLGIQLNFFDASSSSSSSLISCSDPVCNSAFQTTSTQCLSQSNQCSYTFQYGDGSGTSGYYVSESMYFDMVMGHSMIANASASVVFGCSTYQSGDLTKSDHAVDGIFGFGPGDLSVISQLSARGITPKVFSHCLKGEGNGGGILVLGEVLEPGIVYSPLVPSQPHYNLYLQSITVNGQTLPIDPSVFATSNNRGTIVDSGTTLAYLVEEAYTPFVSAITAAVSQSVTPTISKGNQCYLVSTSVGEIFPLVSLNFAGSASMVLKPEEYLMHLGFYDGAALWCIGIQKVQEGVTILGDLVMKDKIFVYDLARQRIGWANYDCSQAVNVSVTSGKNEFVNAGQLSVSSSTRDKLLQSLTMEALALLMSSFILFINFKFL 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3910975 3915332 + Hsped.05g03160.1 Hepe05g0316 569581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0316 497 SUPERFAMILY Acid proteases 79 445 IPR021109 -
Hepe05g0316 497 FunFam Aspartic proteinase-like protein 2 66 269 - -
Hepe05g0316 497 FunFam Aspartic proteinase-like protein 2 270 448 - -
Hepe05g0316 497 ProSiteProfiles Peptidase family A1 domain profile. 83 437 IPR033121 -
Hepe05g0316 497 Pfam Xylanase inhibitor N-terminal 83 268 IPR032861 -
Hepe05g0316 497 PRINTS Pepsin (A1) aspartic protease family signature 316 327 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Hepe05g0316 497 PRINTS Pepsin (A1) aspartic protease family signature 413 428 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Hepe05g0316 497 PRINTS Pepsin (A1) aspartic protease family signature 89 109 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Hepe05g0316 497 CDD pepsin_A_like_plant 83 441 IPR034161 -
Hepe05g0316 497 PANTHER ASPARTYL PROTEASES 30 441 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Hepe05g0316 497 Pfam Xylanase inhibitor C-terminal 286 437 IPR032799 -
Hepe05g0316 497 Gene3D Acid Proteases 67 269 IPR021109 -
Hepe05g0316 497 Gene3D Acid Proteases 270 448 IPR021109 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0316 Hepe-Chr5:3910975 Hepe09g1245 Hepe-Chr9:16348843 1.11e-97 dispersed
Hepe04g0988 Hepe-Chr4:64372803 Hepe05g0316 Hepe-Chr5:3910975 3.63e-215 wgd
Hepe05g0316 Hepe-Chr5:3910975 Hepe08g0941 Hepe-Chr8:8711171 3.06e-212 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0316 - - - 0.0