Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0317 ATGGCGGCTTCTCAGGCGACGGTTCATGTCTCTCCGGCATCTTCTCTCTACGTTGGCGACCTTCATCCTGATGTCACTGATGGCCAACTCTTTGATGCTTTCTCTGGATTCAAGAGTCTCGCCTCTGTTCGTATCTGTAGAGATTCCGCCACTGGACGCTCTCTCTCTTATGGCTACGTCAATTTTATTTCTCCTCAAGACGCAATCAATGCCATGGATGTAATGAATCACAGTGTGTTGAATGGAAAAGCGATTCGAGTCATGTGGTCACGTCGCGATGCTGATGCAAGAAAAAGTGGAATTGGAAACGTGTTTGTTAAGAACTTGAGCGATTCAATCAATAGTTTAGGACTTCAAGTGCTATTTAACAAATTTGGACATGTTCAGTCCTGCAAAGTTGCCACATCCGATGATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAGTCTGAGGATTCTGCTAATGGTGCCATAGAGTCACTGAATGGTTTTACCGTTGGGGATAAGCAGATGTATGTCGGAAAGTTTGTCAGGAAAAGTGATCGAGTTTTGGCTAATCCTGATGTTAAATTTACAAATCTGTATGTGAAAAATCTTGACCCAGAAGTTGAGGAAGAGCTTTTGCTGGAAACATTCTCTGAGTTTGGAAGAATTTCCAGCTTGGCTATTTCAAAGGATGAGAATGGGATGTCAAGGGGTTTTGGCTTTATAAACTTTGACAACTTTGATGATGCCAAACGGGCATTGGAAGAACTTAATGGATCCCAACTTGGTTCAAAGGTTATCTACATCGGGAGGGCACAAAAGAAGTCTGAACGTGAGCAACTATTACGTCGTCATTACGAACAAAAACGAAAGGAGCAAATGTTAAAATGCAAGGGCTCAAATGTGTATGTGAAGAACATTGATGATGCTGTAACCGATGAAGAGCTGAGAGAACATTTTAGTCAGTATGGCACCATCACTTCATCAAAACTTATGCGGGATGACAAGGGAATAAACAAAGGGTTTGGATTTGTTTGCTTCTCTAATCCCGACGAAGCTAAAAGAGCTGTGAACACTTTACAAGGATGTATGTTTCACGGCAAGCCACTCTATTTGGCTATTGCACAAAGAAAAGAGGATAGACAAATGCAATTGAAGCTTCAGTTTGCGCAACGGTTGTCGGCGATACCGGGACCGTCAACTACAATTTTTCCTGGTGGATACCCTCCTTATTACTACACAGCACCAGGTGTTGTTCCACAAGTACCATCTCGTCCAAATCTGATGTTTCAGCCTTTACCCACCTTAGGAATGAGGCCTGGATGGAGACCTAGTACTTTTGCATCTCCTGCAAGACCTGGTTTTCAACCTTCACCTGTACCTATTATTCCGAATGCTTCTAGGCAACCCAGGCAAAACAGAGGCAAAATGAATGGACCAATGCTTTCTCATCAAAATGGTATCCAATCTGTCTCTTATATGCCAAACTCACAAGATGGCAATCAATCAGTAGTTGCTGCAAAATCATCCGGCAATCAGCAGTGGACCGGACAGGTTAAGTATGTCCCGAATGCTCGACCCTGCGAAACAAACACAGCTTCTGGAGGCTCATCCGCTGCTTTTAATTCTGTTGGAGATGTCTCGCAGGGATCTCAAATATGGAGCAGCATGCTTGCTGTCTCTCCCTCAGACCAACAGAAACAGATCATTGGGGAGCATCTCTACCCACTAGTCCAAAAACACAAGCCGGAGCTTGCTGCGAAAATTACTGGGATGCTTCTGGAGATGGACAACTCGGAATTGCTGCTCCTGTTAGAGTCACCTGAATCTCTGTCTGCCAAGGTTGAAGAAGCAGTGCAGGTGCTTATGATCTCCAAGACTAAGCTGTCGTCCAACCAAGACACACTTGGTTTCTTATCACCAGAAGTTGCAGTCAGCTGA 1929 44.12 MAASQATVHVSPASSLYVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSATGRSLSYGYVNFISPQDAINAMDVMNHSVLNGKAIRVMWSRRDADARKSGIGNVFVKNLSDSINSLGLQVLFNKFGHVQSCKVATSDDGKSKGYGFVQFESEDSANGAIESLNGFTVGDKQMYVGKFVRKSDRVLANPDVKFTNLYVKNLDPEVEEELLLETFSEFGRISSLAISKDENGMSRGFGFINFDNFDDAKRALEELNGSQLGSKVIYIGRAQKKSEREQLLRRHYEQKRKEQMLKCKGSNVYVKNIDDAVTDEELREHFSQYGTITSSKLMRDDKGINKGFGFVCFSNPDEAKRAVNTLQGCMFHGKPLYLAIAQRKEDRQMQLKLQFAQRLSAIPGPSTTIFPGGYPPYYYTAPGVVPQVPSRPNLMFQPLPTLGMRPGWRPSTFASPARPGFQPSPVPIIPNASRQPRQNRGKMNGPMLSHQNGIQSVSYMPNSQDGNQSVVAAKSSGNQQWTGQVKYVPNARPCETNTASGGSSAAFNSVGDVSQGSQIWSSMLAVSPSDQQKQIIGEHLYPLVQKHKPELAAKITGMLLEMDNSELLLLLESPESLSAKVEEAVQVLMISKTKLSSNQDTLGFLSPEVAVS 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3919342 3923086 + Hsped.05g03170.1 Hepe05g0317 569582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0317 642 Gene3D - 103 184 IPR012677 -
Hepe05g0317 642 CDD RRM4_I_PABPs 295 373 - -
Hepe05g0317 642 SUPERFAMILY RNA-binding domain, RBD 295 384 IPR035979 GO:0003676(InterPro)
Hepe05g0317 642 Gene3D - 278 382 IPR012677 -
Hepe05g0317 642 Gene3D - 185 277 IPR012677 -
Hepe05g0317 642 SMART rrm1_1 15 88 IPR000504 GO:0003723(InterPro)
Hepe05g0317 642 SMART rrm1_1 194 266 IPR000504 GO:0003723(InterPro)
Hepe05g0317 642 SMART rrm1_1 297 369 IPR000504 GO:0003723(InterPro)
Hepe05g0317 642 SMART rrm1_1 103 175 IPR000504 GO:0003723(InterPro)
Hepe05g0317 642 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 92 IPR000504 GO:0003723(InterPro)
Hepe05g0317 642 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 179 IPR000504 GO:0003723(InterPro)
Hepe05g0317 642 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 14 618 IPR006515 GO:0003723(InterPro)
Hepe05g0317 642 SMART poly_2 558 621 IPR002004 GO:0003723(InterPro)
Hepe05g0317 642 Gene3D - 544 622 - -
Hepe05g0317 642 Pfam RNA recognition motif 195 263 IPR000504 GO:0003723(InterPro)
Hepe05g0317 642 Pfam RNA recognition motif 104 172 IPR000504 GO:0003723(InterPro)
Hepe05g0317 642 Pfam RNA recognition motif 298 366 IPR000504 GO:0003723(InterPro)
Hepe05g0317 642 Pfam RNA recognition motif 16 86 IPR000504 GO:0003723(InterPro)
Hepe05g0317 642 MobiDBLite consensus disorder prediction 451 472 - -
Hepe05g0317 642 FunFam Polyadenylate-binding protein 544 630 - -
Hepe05g0317 642 SUPERFAMILY RNA-binding domain, RBD 14 181 IPR035979 GO:0003676(InterPro)
Hepe05g0317 642 SUPERFAMILY PABC (PABP) domain 510 619 IPR036053 GO:0003723(InterPro)
Hepe05g0317 642 Pfam Poly-adenylate binding protein, unique domain 554 618 IPR002004 GO:0003723(InterPro)
Hepe05g0317 642 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 373 IPR000504 GO:0003723(InterPro)
Hepe05g0317 642 PANTHER RNA BINDING PROTEIN 193 450 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Hepe05g0317 642 FunFam Poly(A) binding protein cytoplasmic 1 like 94 183 - -
Hepe05g0317 642 FunFam Polyadenylate-binding protein 279 387 - -
Hepe05g0317 642 SUPERFAMILY RNA-binding domain, RBD 186 282 IPR035979 GO:0003676(InterPro)
Hepe05g0317 642 Gene3D - 2 102 IPR012677 -
Hepe05g0317 642 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 270 IPR000504 GO:0003723(InterPro)
Hepe05g0317 642 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 546 623 IPR002004 GO:0003723(InterPro)
Hepe05g0317 642 SMART rrm2_1 194 266 IPR003954 GO:0003676(InterPro)
Hepe05g0317 642 SMART rrm2_1 103 175 IPR003954 GO:0003676(InterPro)
Hepe05g0317 642 SMART rrm2_1 297 369 IPR003954 GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1193 Hepe-Chr2:14994731 Hepe05g0317 Hepe-Chr5:3919342 1.78e-11 dispersed
Hepe05g0317 Hepe-Chr5:3919342 Hepe06g1673 Hepe-Chr6:67760285 1.49e-24 dispersed
Hepe05g0317 Hepe-Chr5:3919342 Hepe02g0597 Hepe-Chr2:6124328 1.52e-149 transposed
Hepe05g0317 Hepe-Chr5:3919342 Hepe07g0453 Hepe-Chr7:4693582 1.57e-149 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0317 K13126 - csv:101203793 1041.95