Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0325 ATGGGGGCCTCGCTCTCGACCTTGAGTGAAGTTGCGAATGGCTCTACCATCAGTCCTGGCCTCGGCGATATACCGGAGTGTTGCGTCGCCTGTGTTTTTCTTTACCTTACTCCGCCGGAGATTTGTAACCTCGCGCGGCTTAACAGGGCGTTTCGCGGCGCCGCCTCGTCGGATTCCGTTTGGGAATCGAAATTGCCCTCGAATTATCAAGATCTTCTCGATTTTTTGCCCCCCGAACGGTACCAAAATCTGTCGAAAAAGGATATATACGCACTGCTATCTCGTCCCGTGCCATTCGATGGTGGAAATAAGGAGGTGTGGCTGGACAGAATTTCTGGAAGAATTTGCATGTCGATTTCAGCGAAGGCCATGGCTATAACTGGAATTGATGATAGAAGATACTGGAATTGGATTCCTACTGAAGAGTCTCGGTTCAACGTTGTGGCATATCTGCAGCAAATTTGGTGGTTTGAAGTAGATGGGATGGTGAAGTTCCCATTTCCTGCTGATATCTATACACTGACCTTCAGGCTTCACCTTGGAAAGTTCTACAAGCGGCTCGGCCGACGTGTAAGCAGCTTCGAGCATACTCACGGTTGGGATGTAAAGCCAGTACGGTTTGAAATGTCTACTTCTGATGGACAGCAAGCGACATATGAGTTCTGTTTAGACGAGCACGGATTTCTTGATGTAAGTGGACACCGTAAGCGCGGGTGTTGGATAGAATACAAGGTAGGTGAATTTTTGGTCGACAAGTCGGGATCAGCCACAGAAATTAGATTTTCCATGAAACAGATTGACTGCACGCATTCTAAAGGTTATACCATTTTTAGGCTTTTGATATTTCGGAGGTTGTCGTCTCGGTTTTCCCCGATAGATGCCTTTAAGGGAGGCTTGAAAGCAATAGAAGAAACAGGTTCTTCTCTTTGGCATCTTCAAAAGTAG 945 46.98 MGASLSTLSEVANGSTISPGLGDIPECCVACVFLYLTPPEICNLARLNRAFRGAASSDSVWESKLPSNYQDLLDFLPPERYQNLSKKDIYALLSRPVPFDGGNKEVWLDRISGRICMSISAKAMAITGIDDRRYWNWIPTEESRFNVVAYLQQIWWFEVDGMVKFPFPADIYTLTFRLHLGKFYKRLGRRVSSFEHTHGWDVKPVRFEMSTSDGQQATYEFCLDEHGFLDVSGHRKRGCWIEYKVGEFLVDKSGSATEIRFSMKQIDCTHSKGYTIFRLLIFRRLSSRFSPIDAFKGGLKAIEETGSSLWHLQK 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4020816 4024304 - Hsped.05g03250.1 Hepe05g0325 569590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0325 314 Pfam Phloem protein 2 115 273 IPR025886 -
Hepe05g0325 314 CDD F-box_AtSKIP3-like 21 66 - -
Hepe05g0325 314 SUPERFAMILY F-box domain 8 91 IPR036047 GO:0005515(InterPro)
Hepe05g0325 314 PANTHER F-BOX PROTEIN PP2-A15 2 273 - -
Hepe05g0325 314 Pfam F-box domain 23 62 IPR001810 GO:0005515(InterPro)
Hepe05g0325 314 ProSiteProfiles F-box domain profile. 18 64 IPR001810 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0325 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0325 Hepe-Chr5:4020816 Hepe06g1231 Hepe-Chr6:62049101 2.28e-95 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1066 Blo01g01214 . Bda01g00379 . . Bpe03g01258 . Bma10g00068 Cmo06g00429 Cmo14g00248 . . . . . . Cpe08g01056 . . . . . . . . . . . . . . . . Cone13ag1222 Cone19ag1208 . . . Cme04g02448 Blo07g01367 . . Bda05g01194 . Bpe02g00745 . . Sed02g0580 . . Cma06g00432 Cma14g00257 Car06g00371 Car14g00236 Cpe03g00224 . Bhi11g01999 Tan08g1792 Cmetu06g1349 . Hepe05g0325 . . Cla10g01856 Cam10g1912 Cec10g1967 Cco10g1940 Clacu10g1928 Cmu10g2672 Cre10g2061 Lsi03g01952 Csa03g03361 Chy04g01981 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004482 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 42