Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0346 ATGCCTTCCACCCCAACCCTCTTCAGAACTCCCTTCATCTCCAACTGGTTTGCACTGATGATCATCTCCTCCTCCATTTCCCCTCTCTTTCTTTCCCAATTTTCCACTCTCCATAAATGGCTTCTCCCCTTCTTCAACCCCACCACCACCCAATTCCCTCTTCTTTCACTTCCTTTACTCAATTCAACCTCACTCTCCATGTCTTCTTCCGGCCGCCACCCGGTTTACCGAGGAGTTAGACGAAGGAACACCGGAAAATGGGTCTCCGAAATTCGAGAGCCGAGGAAGCCCAACCGGATTTGGTTGGGAACCTTCCCGACCCCCGAAATGGCCGCCGTCGCTTACGACGTCGCCGCCCTTGCCCTCAAGGGCGACGACGCCCAACTCAATTTCCCCAATTCCGCCTCGTCTCTCCCCGTTCCTGAGTCGCGGTCGCCGTCTGATATTCAGGCGGCGGCCACCTCGGCCGCCGCTGCGCTTGGAGCCGCTGCGGCGGCTATGGAAGCGCGAAATAGTACTCGTAGTAGTTCATCTGGAACTTATTCTAGTAACGAGTATGGAACAAGATATGATCAAGAGGAACGAGGAAATCACTTTGTTGATGAGGACTTGATCTTTGATATGCCTAATGTTCTAATGAACATGGCGGAAGGAATGCTTCTTAGCCCTCCTCGTTTCAACAACCACGGCGGAGACGACGACGGGAATTACAACGCTTTGGCTGCGGTTTCCATTGAAAAGGAGAGCAGTCGTTTGGTGAAGAAAAAAGCAAAAGCAAAAACAAAGCAAGTTGGAAGGTTAAGTCAGTTGGATAATGAGAACTCTGATTAA 831 51.26 MPSTPTLFRTPFISNWFALMIISSSISPLFLSQFSTLHKWLLPFFNPTTTQFPLLSLPLLNSTSLSMSSSGRHPVYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTPEMAAVAYDVAALALKGDDAQLNFPNSASSLPVPESRSPSDIQAAATSAAAALGAAAAAMEARNSTRSSSSGTYSSNEYGTRYDQEERGNHFVDEDLIFDMPNVLMNMAEGMLLSPPRFNNHGGDDDGNYNALAAVSIEKESSRLVKKKAKAKTKQVGRLSQLDNENSD 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4242945 4244333 + Hsped.05g03460.1 Hepe05g0346 569611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0346 276 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 69 213 IPR051032 -
Hepe05g0346 276 SUPERFAMILY DNA-binding domain 75 134 IPR016177 GO:0003677(InterPro)
Hepe05g0346 276 Gene3D AP2/ERF domain 75 133 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g0346 276 ProSiteProfiles AP2/ERF domain profile. 75 132 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g0346 276 FunFam Ethylene-responsive transcription factor 2 74 133 - -
Hepe05g0346 276 SMART rav1_2 75 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g0346 276 MobiDBLite consensus disorder prediction 169 187 - -
Hepe05g0346 276 PRINTS Ethylene responsive element binding protein signature 114 134 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g0346 276 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g0346 276 MobiDBLite consensus disorder prediction 169 194 - -
Hepe05g0346 276 Pfam AP2 domain 74 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g0346 276 CDD AP2 76 134 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g0346 276 MobiDBLite consensus disorder prediction 251 276 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0346 Hepe-Chr5:4242945 Hepe06g1584 Hepe-Chr6:66597853 4.97e-47 dispersed
Hepe05g0346 Hepe-Chr5:4242945 Hepe05g0347 Hepe-Chr5:4270449 6.52e-30 tandem
Hepe04g1007 Hepe-Chr4:64689044 Hepe05g0346 Hepe-Chr5:4242945 2.22e-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55561 PF00847 AP2 2.00E-12 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0346 - - - 0.0