Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0407 ATGTCCATTAACCACTTTTCTACAGACTTCCAATTTCCCATCATGCTTAACAACACCAAATCCTCCTTCTCCACCGCCGCCGTCGTCGCCGCCGCCGACCACCACCCCAAGCAACCCATGTTCGAAAAACCCTTAACTCCTAGCGACGTCGGCAAGCTCAACCGCCTCGTCATCCCCAAGCAATATGCAGAGAAATACTTTCCTCTCTCCCCCACCGCCGCCGCCGCCGCCGCCGCTTCCGGCGGCGACTCCGGCGACAAGGGGTTACTTCTTAGCTTCGAAGATGAGTCCGGCAAGGTGTGGCGGTTCCGTTATTCGTATTGGAATAGTAGCCAGAGCTATGTGCTGACTAAGGGCTGGAGCCGCTTCGTCAAAGAGAAGCGCCTCGATGCTGGCGATGTTGTTGTTTTTGAACGCCACCGCCGGGATGGTGATAGGCTTTTTATTGGGTGGAAGCGGCGGCCGGTAACGCCGGAGACGGCGGCGCCGGAGAGTAGCGGCGGTGGGAGTTGGACTAGAATGTTCTGCTCTGGAAACCCATATCCTTCTCAAAATCATCATCATCTTCCTTCACCGCCATTCCAATCTTCTGATTGTCCTCATGCAGACTCCTCTGTTAAGAGTCAAACAGTGGCGGTTGGGAGCTCAAAGATACTACGGCTGTTCGGAGTGGACTTGGAGTGCCAAACCGACATGTCGGAACCTGAACCACCGTCCATGCTCGGTTCCGGCTCCGGTTTATCGGGTCGAGACCCGACCCACCACAACTTCTACACACATTATTCTTCTCCTCTTCCTCATCACATGGATTTCACTTTCTCACAAGATGTCAAGCAGACGAAATATGAAGGATAG 855 54.04 MSINHFSTDFQFPIMLNNTKSSFSTAAVVAAADHHPKQPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSPTAAAAAAASGGDSGDKGLLLSFEDESGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRPVTPETAAPESSGGGSWTRMFCSGNPYPSQNHHHLPSPPFQSSDCPHADSSVKSQTVAVGSSKILRLFGVDLECQTDMSEPEPPSMLGSGSGLSGRDPTHHNFYTHYSSPLPHHMDFTFSQDVKQTKYEG 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5062818 5067300 - Hsped.05g04070.1 Hepe05g0407 569672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0407 284 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 31 226 IPR044800 GO:0003700(InterPro)
Hepe05g0407 284 Pfam B3 DNA binding domain 41 154 IPR003340 GO:0003677(InterPro)
Hepe05g0407 284 SMART B3_2 41 155 IPR003340 GO:0003677(InterPro)
Hepe05g0407 284 MobiDBLite consensus disorder prediction 232 254 - -
Hepe05g0407 284 SUPERFAMILY DNA-binding pseudobarrel domain 36 154 IPR015300 -
Hepe05g0407 284 CDD B3_DNA 39 144 IPR003340 GO:0003677(InterPro)
Hepe05g0407 284 ProSiteProfiles B3 DNA-binding domain profile. 41 155 IPR003340 GO:0003677(InterPro)
Hepe05g0407 284 Gene3D - 30 167 IPR015300 -
Hepe05g0407 284 MobiDBLite consensus disorder prediction 182 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0407 Hepe-Chr5:5062818 Hepe07g0751 Hepe-Chr7:9030726 6.81e-48 dispersed
Hepe05g0407 Hepe-Chr5:5062818 Hepe01g1220 Hepe-Chr1:77380913 8.68e-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55568 PF02362 B3 1.00E-30 CL0405 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0407 K09287 - csv:101214938 398.667