Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0444 ATGGACGAGATCGAAGTCCCTCATTACTTCATCTGCCCGATCTCTCTCGAGATCATGAAGGACCCCGTTACACTCCCTAGCGGCATAACCTACGACCGTCTTAGCATCGAAACCTGGCTCTACTCCAACAAAAACTCCTCGTGCCCCGTCACGAAACTCCCCATTTCCGACTCCGACTCCGATTTCCTCACTCCGAATCACACCCTCCGCCGTCTAATCCAAGCTTGGTGCACTTTAAACTCCTCTCACGGCGTTGAACGCTTCCCCACTCCTAAACCACCCATCAACAAATCCCAAATCCAAAAACTCATTTCCAATTCCAATTCCAATTCTAATTCCTCCTTACTCTCCTGCATCCGCCGCCTCCGCTCCCTCTCCGCCGAATCCGAATCCAACCGCCGCTGCATCGAATCCGCCGGCGCCGCCGAATTCCTCGCCTCTGTTCTCACCAACTCCCTCCCTTCCTCCTCTATCTCCCACGAAGCTCTCTCTACACTCCACAATCTCCGCCTCTCCGATTCCAAATTGAAATCGCTGATAACCCAAAACGGAAACGGGCCAAACGGCGACTTTTTTGATTCCTTGACGAAAGTAATGCAACAGGGGAATTACGAATCCCGGGCGTACGCGGTGTTGGTTTTGAAATCAATCGTCGAAGTCGCCGACCCAATTGACCTGACGTTTCTGAAATCCGAGCTGTTTGTTGAAATCGTTGAGATTTTGAAGGATCAGAAATCAGAGCAGAGCTTGAAAGCGGGATTGATGGTATTGGTGATGACGTTACCGTGGGGGAGGAACAGAGTGAAGGCGGTGGAGGCAGGTGGGGTTGGAGTATTGGTGGAGATTCTGCTGGCATCGGCGACGGCGGAGATGAAAAGGGTGTGTGAAATGGCGTTGACAGCAGTGGATTTGCTTTGTGGGTGTGCAGAGGGGAGGGCGGCGTTGTTGGCGCACGGCGGAGGGATGGCGGTGGTTTCGAAGAAGATACTGAGAGTTTCGCAAGTGGGGAGTGAGAGGGCGGTGAGGATATTGTATTCGGTGGCGAAATACTCGGGGAGTGCGGCGGTGGTGATGGAGATGGCGCAGTTGGGAATTGTAGCGAAGCTTTGTTTGGTTCTGCAAGTTGAAAGTGGGAGGAAGACGAAGGAGAAAGCAAAGGAGATATTGAAAATGCATGGTCGTGTTTGGAGGAATTCGCCTTGTATTCCATTGAAATTGGCTTCTTCATTTCTTGCAAATTAA 1242 51.61 MDEIEVPHYFICPISLEIMKDPVTLPSGITYDRLSIETWLYSNKNSSCPVTKLPISDSDSDFLTPNHTLRRLIQAWCTLNSSHGVERFPTPKPPINKSQIQKLISNSNSNSNSSLLSCIRRLRSLSAESESNRRCIESAGAAEFLASVLTNSLPSSSISHEALSTLHNLRLSDSKLKSLITQNGNGPNGDFFDSLTKVMQQGNYESRAYAVLVLKSIVEVADPIDLTFLKSELFVEIVEILKDQKSEQSLKAGLMVLVMTLPWGRNRVKAVEAGGVGVLVEILLASATAEMKRVCEMALTAVDLLCGCAEGRAALLAHGGGMAVVSKKILRVSQVGSERAVRILYSVAKYSGSAAVVMEMAQLGIVAKLCLVLQVESGRKTKEKAKEILKMHGRVWRNSPCIPLKLASSFLAN 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5769797 5771339 + Hsped.05g04440.1 Hepe05g0444 569709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0444 413 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 140 184 IPR000225 GO:0005515(InterPro)
Hepe05g0444 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Hepe05g0444 413 Pfam U-box domain 6 80 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe05g0444 413 SUPERFAMILY ARM repeat 98 379 IPR016024 -
Hepe05g0444 413 CDD RING-Ubox_PUB 7 59 IPR045210 -
Hepe05g0444 413 SUPERFAMILY RING/U-box 3 84 - -
Hepe05g0444 413 Gene3D - 96 267 IPR011989 -
Hepe05g0444 413 SMART Ubox_2 9 76 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe05g0444 413 ProSiteProfiles U-box domain profile. 5 83 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe05g0444 413 Gene3D - 268 396 IPR011989 -
Hepe05g0444 413 PANTHER WDSAM1 PROTEIN 3 405 IPR045185 GO:0061630(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1008 Hepe-Chr2:12384485 Hepe05g0444 Hepe-Chr5:5769797 1.07e-51 dispersed
Hepe04g0644 Hepe-Chr4:59663734 Hepe05g0444 Hepe-Chr5:5769797 7.51e-146 dispersed
Hepe05g0444 Hepe-Chr5:5769797 Hepe09g1221 Hepe-Chr9:15368906 7.67e-77 dispersed
Hepe01g0606 Hepe-Chr1:67335627 Hepe05g0444 Hepe-Chr5:5769797 6.85e-62 transposed
Hepe06g1837 Hepe-Chr6:69483816 Hepe05g0444 Hepe-Chr5:5769797 2.54e-07 transposed
Hepe05g0444 Hepe-Chr5:5769797 Hepe08g0193 Hepe-Chr8:1750951 4.36e-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0444 - - - 0.0