Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe05g0444 | ATGGACGAGATCGAAGTCCCTCATTACTTCATCTGCCCGATCTCTCTCGAGATCATGAAGGACCCCGTTACACTCCCTAGCGGCATAACCTACGACCGTCTTAGCATCGAAACCTGGCTCTACTCCAACAAAAACTCCTCGTGCCCCGTCACGAAACTCCCCATTTCCGACTCCGACTCCGATTTCCTCACTCCGAATCACACCCTCCGCCGTCTAATCCAAGCTTGGTGCACTTTAAACTCCTCTCACGGCGTTGAACGCTTCCCCACTCCTAAACCACCCATCAACAAATCCCAAATCCAAAAACTCATTTCCAATTCCAATTCCAATTCTAATTCCTCCTTACTCTCCTGCATCCGCCGCCTCCGCTCCCTCTCCGCCGAATCCGAATCCAACCGCCGCTGCATCGAATCCGCCGGCGCCGCCGAATTCCTCGCCTCTGTTCTCACCAACTCCCTCCCTTCCTCCTCTATCTCCCACGAAGCTCTCTCTACACTCCACAATCTCCGCCTCTCCGATTCCAAATTGAAATCGCTGATAACCCAAAACGGAAACGGGCCAAACGGCGACTTTTTTGATTCCTTGACGAAAGTAATGCAACAGGGGAATTACGAATCCCGGGCGTACGCGGTGTTGGTTTTGAAATCAATCGTCGAAGTCGCCGACCCAATTGACCTGACGTTTCTGAAATCCGAGCTGTTTGTTGAAATCGTTGAGATTTTGAAGGATCAGAAATCAGAGCAGAGCTTGAAAGCGGGATTGATGGTATTGGTGATGACGTTACCGTGGGGGAGGAACAGAGTGAAGGCGGTGGAGGCAGGTGGGGTTGGAGTATTGGTGGAGATTCTGCTGGCATCGGCGACGGCGGAGATGAAAAGGGTGTGTGAAATGGCGTTGACAGCAGTGGATTTGCTTTGTGGGTGTGCAGAGGGGAGGGCGGCGTTGTTGGCGCACGGCGGAGGGATGGCGGTGGTTTCGAAGAAGATACTGAGAGTTTCGCAAGTGGGGAGTGAGAGGGCGGTGAGGATATTGTATTCGGTGGCGAAATACTCGGGGAGTGCGGCGGTGGTGATGGAGATGGCGCAGTTGGGAATTGTAGCGAAGCTTTGTTTGGTTCTGCAAGTTGAAAGTGGGAGGAAGACGAAGGAGAAAGCAAAGGAGATATTGAAAATGCATGGTCGTGTTTGGAGGAATTCGCCTTGTATTCCATTGAAATTGGCTTCTTCATTTCTTGCAAATTAA | 1242 | 51.61 | MDEIEVPHYFICPISLEIMKDPVTLPSGITYDRLSIETWLYSNKNSSCPVTKLPISDSDSDFLTPNHTLRRLIQAWCTLNSSHGVERFPTPKPPINKSQIQKLISNSNSNSNSSLLSCIRRLRSLSAESESNRRCIESAGAAEFLASVLTNSLPSSSISHEALSTLHNLRLSDSKLKSLITQNGNGPNGDFFDSLTKVMQQGNYESRAYAVLVLKSIVEVADPIDLTFLKSELFVEIVEILKDQKSEQSLKAGLMVLVMTLPWGRNRVKAVEAGGVGVLVEILLASATAEMKRVCEMALTAVDLLCGCAEGRAALLAHGGGMAVVSKKILRVSQVGSERAVRILYSVAKYSGSAAVVMEMAQLGIVAKLCLVLQVESGRKTKEKAKEILKMHGRVWRNSPCIPLKLASSFLAN | 413 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 5769797 | 5771339 | + | Hsped.05g04440.1 | Hepe05g0444 | 569709 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe05g0444 | 413 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 140 | 184 | IPR000225 | GO:0005515(InterPro) | |
Hepe05g0444 | 413 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 87 | IPR013083 | - | |
Hepe05g0444 | 413 | Pfam | U-box domain | 6 | 80 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Hepe05g0444 | 413 | SUPERFAMILY | ARM repeat | 98 | 379 | IPR016024 | - | |
Hepe05g0444 | 413 | CDD | RING-Ubox_PUB | 7 | 59 | IPR045210 | - | |
Hepe05g0444 | 413 | SUPERFAMILY | RING/U-box | 3 | 84 | - | - | |
Hepe05g0444 | 413 | Gene3D | - | 96 | 267 | IPR011989 | - | |
Hepe05g0444 | 413 | SMART | Ubox_2 | 9 | 76 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Hepe05g0444 | 413 | ProSiteProfiles | U-box domain profile. | 5 | 83 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Hepe05g0444 | 413 | Gene3D | - | 268 | 396 | IPR011989 | - | |
Hepe05g0444 | 413 | PANTHER | WDSAM1 PROTEIN | 3 | 405 | IPR045185 | GO:0061630(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe02g1008 | Hepe-Chr2:12384485 | Hepe05g0444 | Hepe-Chr5:5769797 | 1.07e-51 | dispersed | |
Hepe04g0644 | Hepe-Chr4:59663734 | Hepe05g0444 | Hepe-Chr5:5769797 | 7.51e-146 | dispersed | |
Hepe05g0444 | Hepe-Chr5:5769797 | Hepe09g1221 | Hepe-Chr9:15368906 | 7.67e-77 | dispersed | |
Hepe01g0606 | Hepe-Chr1:67335627 | Hepe05g0444 | Hepe-Chr5:5769797 | 6.85e-62 | transposed | |
Hepe06g1837 | Hepe-Chr6:69483816 | Hepe05g0444 | Hepe-Chr5:5769797 | 2.54e-07 | transposed | |
Hepe05g0444 | Hepe-Chr5:5769797 | Hepe08g0193 | Hepe-Chr8:1750951 | 4.36e-138 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe05g0444 | - | - | - | 0.0 |