Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe05g0449 | ATGAACGATTTGTTCTCCTCTCGTTCCTTCTCTCGCGACACCCATGTCGTCGAAATGGGCAACGCCTCCTCTTCCCCTACTGCTGTTAATCTCGACAAATTCTTCGAAGATGTTGAATCTGTCAAAGACGAGCTCAAGGAACTCGAACGACTCTTCCAGAATCTCCATGCTTCCCATGAACAGAGCAAGACCCTTCACAATGCTAAGGCTGTTAAGGATCTCCGATCCCGCATGGATTCTGATGTTGCTTTAGCTCTTAAGAAAGCTAAGCTTATTAAGGTCCGATTGGAGGCTCTTGATCGCTCCAATGCTGCCAATCGGAGCCTCCCCGGTTGCGGTCCTGGATCGTCTTCTGATCGGACGAGGACTTCTGTAGTTAATGGATTGAGGAAGAAGTTGCAGGATTCTATGGAGAGTTTCAATAATTTGAGGCAACAGATCTCTTCTGAGTATAGGGAGACCGTTCAGCGGAGATATTTTACTGTTACTGGTGAAAATCCGGATGAGAAGACTATTGATATCTTGATTTCTACTGGTGAAAGTGAGACATTCTTGCAGAAAGCCATTCAAGAACAAGGTAGAGGCAGAATCTTAGACACCATTAGCGAGATCCAGGAGAGGCATGATGCAGTAAAAGACCTGGAAAGGAACCTCAAGGAGCTGCACCAGGTTTTCATGGACATGGCAGTCTTGGTGCACGAGCAAGGCGAGAAGCTCGACGACATCGAGAGCCAAGTGAACAGGGCTCATTCCTTTGTCCGAGGCGGCACACAGGAGTTGACAACAGCCAGAGTATACCAGAAAAACACCCGAAAATGGACAATTATTGCCATCATCATTTTGCTGATCATTGTCTTGGTGATTGTCCTCAGCTTGCAGCCTTGGAAGAAAAATAATAGTGGTTCAACTCCAACCGCGGCCTGA | 924 | 46.97 | MNDLFSSRSFSRDTHVVEMGNASSSPTAVNLDKFFEDVESVKDELKELERLFQNLHASHEQSKTLHNAKAVKDLRSRMDSDVALALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQQISSEYRETVQRRYFTVTGENPDEKTIDILISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLKELHQVFMDMAVLVHEQGEKLDDIESQVNRAHSFVRGGTQELTTARVYQKNTRKWTIIAIIILLIIVLVIVLSLQPWKKNNSGSTPTAA | 307 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 5903970 | 5906407 | + | Hsped.05g04490.1 | Hepe05g0449 | 569714 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe05g0449 | 307 | Pfam | Syntaxin | 33 | 236 | IPR006011 | GO:0016020(InterPro) | |
Hepe05g0449 | 307 | Gene3D | - | 29 | 161 | - | - | |
Hepe05g0449 | 307 | PANTHER | SYNTAXIN | 33 | 282 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Hepe05g0449 | 307 | SMART | SynN_4 | 26 | 152 | IPR006011 | GO:0016020(InterPro) | |
Hepe05g0449 | 307 | SUPERFAMILY | t-snare proteins | 30 | 256 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Hepe05g0449 | 307 | SMART | tSNARE_6 | 196 | 263 | IPR000727 | - | |
Hepe05g0449 | 307 | Gene3D | - | 197 | 293 | - | - | |
Hepe05g0449 | 307 | CDD | SNARE_syntaxin1-like | 200 | 262 | - | - | |
Hepe05g0449 | 307 | ProSitePatterns | Syntaxin / epimorphin family signature. | 207 | 246 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Hepe05g0449 | 307 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 201 | 263 | IPR000727 | - | |
Hepe05g0449 | 307 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 28 | 158 | - | - | |
Hepe05g0449 | 307 | Coils | Coil | 31 | 58 | - | - | |
Hepe05g0449 | 307 | CDD | SynN | 31 | 188 | IPR006011 | GO:0016020(InterPro) | |
Hepe05g0449 | 307 | Coils | Coil | 126 | 150 | - | - | |
Hepe05g0449 | 307 | Coils | Coil | 204 | 224 | - | - | |
Hepe05g0449 | 307 | FunFam | Syntaxin 132 | 194 | 293 | - | - | |
Hepe05g0449 | 307 | Pfam | SNARE domain | 237 | 289 | IPR000727 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe04g0635 | Hepe-Chr4:59513215 | Hepe05g0449 | Hepe-Chr5:5903970 | 2.02e-70 | transposed | |
Hepe04g1523 | Hepe-Chr4:70752625 | Hepe05g0449 | Hepe-Chr5:5903970 | 3.01e-53 | transposed | |
Hepe07g1958 | Hepe-Chr7:63486193 | Hepe05g0449 | Hepe-Chr5:5903970 | 4.66e-112 | transposed | |
Hepe08g0474 | Hepe-Chr8:4173033 | Hepe05g0449 | Hepe-Chr5:5903970 | 5.53e-68 | transposed | |
Hepe04g1076 | Hepe-Chr4:65401673 | Hepe05g0449 | Hepe-Chr5:5903970 | 1.04e-136 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe05g0449 | K08486 | - | csv:101208931 | 540.806 |