Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0449 ATGAACGATTTGTTCTCCTCTCGTTCCTTCTCTCGCGACACCCATGTCGTCGAAATGGGCAACGCCTCCTCTTCCCCTACTGCTGTTAATCTCGACAAATTCTTCGAAGATGTTGAATCTGTCAAAGACGAGCTCAAGGAACTCGAACGACTCTTCCAGAATCTCCATGCTTCCCATGAACAGAGCAAGACCCTTCACAATGCTAAGGCTGTTAAGGATCTCCGATCCCGCATGGATTCTGATGTTGCTTTAGCTCTTAAGAAAGCTAAGCTTATTAAGGTCCGATTGGAGGCTCTTGATCGCTCCAATGCTGCCAATCGGAGCCTCCCCGGTTGCGGTCCTGGATCGTCTTCTGATCGGACGAGGACTTCTGTAGTTAATGGATTGAGGAAGAAGTTGCAGGATTCTATGGAGAGTTTCAATAATTTGAGGCAACAGATCTCTTCTGAGTATAGGGAGACCGTTCAGCGGAGATATTTTACTGTTACTGGTGAAAATCCGGATGAGAAGACTATTGATATCTTGATTTCTACTGGTGAAAGTGAGACATTCTTGCAGAAAGCCATTCAAGAACAAGGTAGAGGCAGAATCTTAGACACCATTAGCGAGATCCAGGAGAGGCATGATGCAGTAAAAGACCTGGAAAGGAACCTCAAGGAGCTGCACCAGGTTTTCATGGACATGGCAGTCTTGGTGCACGAGCAAGGCGAGAAGCTCGACGACATCGAGAGCCAAGTGAACAGGGCTCATTCCTTTGTCCGAGGCGGCACACAGGAGTTGACAACAGCCAGAGTATACCAGAAAAACACCCGAAAATGGACAATTATTGCCATCATCATTTTGCTGATCATTGTCTTGGTGATTGTCCTCAGCTTGCAGCCTTGGAAGAAAAATAATAGTGGTTCAACTCCAACCGCGGCCTGA 924 46.97 MNDLFSSRSFSRDTHVVEMGNASSSPTAVNLDKFFEDVESVKDELKELERLFQNLHASHEQSKTLHNAKAVKDLRSRMDSDVALALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQQISSEYRETVQRRYFTVTGENPDEKTIDILISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLKELHQVFMDMAVLVHEQGEKLDDIESQVNRAHSFVRGGTQELTTARVYQKNTRKWTIIAIIILLIIVLVIVLSLQPWKKNNSGSTPTAA 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5903970 5906407 + Hsped.05g04490.1 Hepe05g0449 569714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0449 307 Pfam Syntaxin 33 236 IPR006011 GO:0016020(InterPro)
Hepe05g0449 307 Gene3D - 29 161 - -
Hepe05g0449 307 PANTHER SYNTAXIN 33 282 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Hepe05g0449 307 SMART SynN_4 26 152 IPR006011 GO:0016020(InterPro)
Hepe05g0449 307 SUPERFAMILY t-snare proteins 30 256 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Hepe05g0449 307 SMART tSNARE_6 196 263 IPR000727 -
Hepe05g0449 307 Gene3D - 197 293 - -
Hepe05g0449 307 CDD SNARE_syntaxin1-like 200 262 - -
Hepe05g0449 307 ProSitePatterns Syntaxin / epimorphin family signature. 207 246 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Hepe05g0449 307 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 201 263 IPR000727 -
Hepe05g0449 307 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 28 158 - -
Hepe05g0449 307 Coils Coil 31 58 - -
Hepe05g0449 307 CDD SynN 31 188 IPR006011 GO:0016020(InterPro)
Hepe05g0449 307 Coils Coil 126 150 - -
Hepe05g0449 307 Coils Coil 204 224 - -
Hepe05g0449 307 FunFam Syntaxin 132 194 293 - -
Hepe05g0449 307 Pfam SNARE domain 237 289 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0635 Hepe-Chr4:59513215 Hepe05g0449 Hepe-Chr5:5903970 2.02e-70 transposed
Hepe04g1523 Hepe-Chr4:70752625 Hepe05g0449 Hepe-Chr5:5903970 3.01e-53 transposed
Hepe07g1958 Hepe-Chr7:63486193 Hepe05g0449 Hepe-Chr5:5903970 4.66e-112 transposed
Hepe08g0474 Hepe-Chr8:4173033 Hepe05g0449 Hepe-Chr5:5903970 5.53e-68 transposed
Hepe04g1076 Hepe-Chr4:65401673 Hepe05g0449 Hepe-Chr5:5903970 1.04e-136 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0449 K08486 - csv:101208931 540.806