Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0457 ATGAACCCCACCACAGACTCCGGCGGATCGACTTCCGCCGGCCCCGTCGGCGGCTTCCCCTACGTCGTCGGAATTTCAGTCGGAATCCTCTTCCTCCTCACAACCCTAACAATCGCCACCTACTTCTGCACCAGAACCACCGTCCCGCAGCCGAGTCGCCGTCGCCGTCTCCGGCCGGAGGAACGGCGGGATTTCGTCGTCGATTTCGGACCGGGGCTCGAAGATGAGGCCATTAATGGGTATCCGAAGATTCTGTACTCGGAGGCGAAATTGGAGGGGAAATTGGAGTCCGCCGCCGCGAGCGGTTGTTCGATTTGTTTGGGGGATTATAAAAACGGCGACGTTTTGCGGTTGTTGCCGGATTGTGGCCATTTGTTTCACAGCGGTTGTATTGATCCGTGGTTACGGCTGAACCCTAGCTGCCCTGTCTGCAGAACGTCGCCGGCGCCGACGCCGATTTCGACTCCTTTAGCGGAGGTGGTTCCGTTGGCCGTCGGAAGGAGTTGA 507 58.97 MNPTTDSGGSTSAGPVGGFPYVVGISVGILFLLTTLTIATYFCTRTTVPQPSRRRRLRPEERRDFVVDFGPGLEDEAINGYPKILYSEAKLEGKLESAAASGCSICLGDYKNGDVLRLLPDCGHLFHSGCIDPWLRLNPSCPVCRTSPAPTPISTPLAEVVPLAVGRS 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6040006 6040587 + Hsped.05g04570.1 Hepe05g0457 569722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0457 168 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Hepe05g0457 168 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 12 162 IPR045899 -
Hepe05g0457 168 SUPERFAMILY RING/U-box 77 149 - -
Hepe05g0457 168 SMART ring_2 103 144 IPR001841 -
Hepe05g0457 168 CDD RING-H2_EL5-like 103 145 - -
Hepe05g0457 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 150 IPR013083 -
Hepe05g0457 168 Pfam Ring finger domain 103 145 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0457 Hepe-Chr5:6040006 Hepe10g0546 Hepe-Chr10:6491903 3.36e-33 dispersed
Hepe01g1274 Hepe-Chr1:78006162 Hepe05g0457 Hepe-Chr5:6040006 3.51e-16 transposed
Hepe02g3366 Hepe-Chr2:83211672 Hepe05g0457 Hepe-Chr5:6040006 3.40e-10 transposed
Hepe04g1077 Hepe-Chr4:65408928 Hepe05g0457 Hepe-Chr5:6040006 7.04e-60 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0457 - - - 0.0