Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0516 ATGGAGCTTGCTTTGAGTCTTGGTGATAATAATAATAATAATAATACTCCTAATTCCAATAAGCCATTATTTTCCTCTAATTTTCTCTCTAAACCCTCTAATTATAAGCTTTTTTCTTCTTCTTCTTCTTCTCTCATGGCTTTGGGATTTTGTGAAGAAGATGATGAAGATGAAAAAATGATTCTTCCTAGTTTGGAACCGCCGATTCAGCTGGATCTTCTTCCTTTGGCTCCTGTTCCTCGTTCTTCTCATCGATTTCCATGGCTTTCTGATCACTTGATCCCGGAATTGGGTTGTTCAGAGGGAGTAGAAAGGGTGTTGGATGTGAACCGGCTGCCGGCGGAGGAGATAGACGACAGGACGGCGGCGGTGGCGGCTGCGGCGGCGCTGTCGTCTCCGAACAGTACGGTGTCATCTTTTCAAATGGATTTTGGAGTGGGACACGGCGGAGGAGGAGGATCGAGAAGCAAGAGATCATCGGATTTGGAAATGGAAACGGAAAGAGGTTCGTCAAGAATCAGTGACGATGAAGAAAATGGGTCTGCTCGGAAAAAGCTTCGACTTTCTAAAGAACAATCGGCTTTTCTTGAAGAGAGCTTCAAAGAACACAGCACCCTTAATCCTAAGCAGAAGCTAGCACTAGCCAAGCAGCTAAATCTCCGACCTAGGCAAGTGGAAGTTTGGTTTCAAAACAGAAGAGCAAGGACAAAATTGAAGCAGACAGAAGTAGATTGTGAGTATTTAAGGAGATGCTGTGAGACATTGACAGAAGAGAACAGAAGATTACAAAAGGAACTTCAAGAATTAAGAGCTTTGAAAACTTCTCAGCCCTTTTATATGCAACTTCCAGCCACCACCCTCACCATGTGCCCGTCGTGCGAGCGCGTCGCAACCACCGCTCCCACCGCCACCAAAACCACGGCCCCGGCCTCTAACCCGCCCGCTCTTTGCCTCGCCAACAAGCCGAGGATCTTGCCATTTCCTCACTTGAACCAAGCTGCTTCATGA 1008 46.53 MELALSLGDNNNNNNTPNSNKPLFSSNFLSKPSNYKLFSSSSSSLMALGFCEEDDEDEKMILPSLEPPIQLDLLPLAPVPRSSHRFPWLSDHLIPELGCSEGVERVLDVNRLPAEEIDDRTAAVAAAAALSSPNSTVSSFQMDFGVGHGGGGGSRSKRSSDLEMETERGSSRISDDEENGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATTAPTATKTTAPASNPPALCLANKPRILPFPHLNQAAS 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7049597 7051731 - Hsped.05g05160.1 Hepe05g0516 569781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0516 335 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 19 307 IPR050762 -
Hepe05g0516 335 SUPERFAMILY Homeodomain-like 181 248 IPR009057 -
Hepe05g0516 335 MobiDBLite consensus disorder prediction 142 186 - -
Hepe05g0516 335 FunFam Homeobox-leucine zipper protein 18 169 244 - -
Hepe05g0516 335 Coils Coil 245 275 - -
Hepe05g0516 335 CDD homeodomain 183 240 IPR001356 GO:0003677(InterPro)
Hepe05g0516 335 SMART halz 239 282 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe05g0516 335 Gene3D - 187 237 - -
Hepe05g0516 335 SMART HOX_1 181 243 IPR001356 GO:0003677(InterPro)
Hepe05g0516 335 Pfam Homeodomain 183 237 IPR001356 GO:0003677(InterPro)
Hepe05g0516 335 MobiDBLite consensus disorder prediction 158 186 - -
Hepe05g0516 335 MobiDBLite consensus disorder prediction 1 23 - -
Hepe05g0516 335 Pfam Homeobox associated leucine zipper 239 273 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe05g0516 335 ProSitePatterns 'Homeobox' domain signature. 214 237 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Hepe05g0516 335 ProSiteProfiles 'Homeobox' domain profile. 179 239 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1268 Hepe-Chr2:15816742 Hepe05g0516 Hepe-Chr5:7049597 5.09e-54 dispersed
Hepe04g1352 Hepe-Chr4:69173731 Hepe05g0516 Hepe-Chr5:7049597 2.56e-64 dispersed
Hepe05g0516 Hepe-Chr5:7049597 Hepe07g0591 Hepe-Chr7:6437643 1.51e-61 dispersed
Hepe05g2068 Hepe-Chr5:71174832 Hepe05g0516 Hepe-Chr5:7049597 9.55e-55 transposed
Hepe06g1115 Hepe-Chr6:59825483 Hepe05g0516 Hepe-Chr5:7049597 1.20e-64 transposed
Hepe03g1708 Hepe-Chr3:74003902 Hepe05g0516 Hepe-Chr5:7049597 1.34e-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55579 PF00046 Homeodomain 1.20E-15 CL0123 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0516 K09338 - csv:101222778 384.8