Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0517 ATGGGTGACGAAATCTTTGATGCAATGAACCTTGACTTGAATCTGGGTCCTGTTCCAGAGCCGCATTCGAACTTGGTTCCAAATGAAGATGTGAATTTAGCTGATTTGACAGAGGATCCTGTTCATAGATTTGGGGAAGCTATCAGGTTTAGGACCAGACATCGATGGAGAAGGCGTCAAGTCCAAATTCCTTCTGAGACTCAGCATATTTCAATAGAATTGAGTGAAATTATGGTCAATTCAGGCAATGGGAATTCATTACAGCCATTACAGGCTGGTGAGGGTAGTATTACTGCTGAGGAAAGGAAAAATGAGGCGGGAAAAACATGTGAAATTAACAATGAAGCTTTGGAAGATGAAAAGGCAGAGAATAAGAGTGATGTCGAAAAGGGCAGTGACTCTGATGGGAGTTTCTTTGATTGCAATATATGTTTGGACTTGGCTAGAGACCCTGTTGTAACTTGTTGCGGTCATCTATACTGCTGGCCTTGCCTGTATCGATGGTTACATCTACATTCAGATGCCAAAGAATGTCCTGTATGTAAAGGAGAGGTTACTACGAAGACTGTGACTCCAATTTATGGGCGTGGCAGCAATACCCCTGTGACAGAGGAGGATGCTACACTTAAGATTCCTCTAAGGCCCCATGCTCGGAAGGTTGAAAGTTTGAGGCAAACCATCCAGAGGACTGCATTTAGTTTCCCAGTGGAGGAGATGATTCGTCGATTGGGAAACAGATTTGATTTCAATCGGGACCTTGACCAACCGCCGGAGCCAGACACTTCACATGAAACATTTGGTAGATCTCCAACCTTGTTGAATAGGATTTTAACATCCAGGGGAATTCGTAGAGAACAAATTTCACTGCCCTCACATGATGATGTAGGAGATTTAGCACACACTGATGTATCAGGCATTGAGGCAGGGGAAACCCGTCTTCAATCTCTCCCAGTGCTTCGATCATTACTACACCGGACAAGAGTTTCTTCTCTTACATCTGCCTTTAATTCTGCTGATAGGCTTCCAGAGGGTTTTTTATATACCGATCCGCTCATTCCTAGAAGTCAAGAGCAGCCTCCTCCACCTGTCGAGGATAGAGATTCTTTCTCTAGCATTGCTGCTGTTATCAATTCAGAGAGTCAACTGGACACTGCTGTAGAGATTGATTCCATGGTCTCCCTTTCAACATCATCATCCAGAAGAAGAAATGATCCTTTACAGGTTTCTGATGTAGACAGTGGAAACTCTCGGGCACCCAGACGGAGAAGATTGGCTTGA 1278 44.13 MGDEIFDAMNLDLNLGPVPEPHSNLVPNEDVNLADLTEDPVHRFGEAIRFRTRHRWRRRQVQIPSETQHISIELSEIMVNSGNGNSLQPLQAGEGSITAEERKNEAGKTCEINNEALEDEKAENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSDAKECPVCKGEVTTKTVTPIYGRGSNTPVTEEDATLKIPLRPHARKVESLRQTIQRTAFSFPVEEMIRRLGNRFDFNRDLDQPPEPDTSHETFGRSPTLLNRILTSRGIRREQISLPSHDDVGDLAHTDVSGIEAGETRLQSLPVLRSLLHRTRVSSLTSAFNSADRLPEGFLYTDPLIPRSQEQPPPPVEDRDSFSSIAAVINSESQLDTAVEIDSMVSLSTSSSRRRNDPLQVSDVDSGNSRAPRRRRLA 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7080281 7082872 - Hsped.05g05170.1 Hepe05g0517 569782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0517 425 MobiDBLite consensus disorder prediction 250 270 - -
Hepe05g0517 425 MobiDBLite consensus disorder prediction 392 425 - -
Hepe05g0517 425 SUPERFAMILY RING/U-box 137 194 - -
Hepe05g0517 425 SMART ring_2 141 181 IPR001841 -
Hepe05g0517 425 Pfam Zinc finger, C3HC4 type (RING finger) 141 181 IPR018957 GO:0046872(InterPro)
Hepe05g0517 425 ProSitePatterns Zinc finger RING-type signature. 156 165 IPR017907 -
Hepe05g0517 425 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 108 292 IPR045103 GO:0005783(InterPro)|GO:0006511(InterPro)|GO:0006511(PANTHER)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER)
Hepe05g0517 425 CDD RING-HC_AtRMA-like 139 182 - -
Hepe05g0517 425 MobiDBLite consensus disorder prediction 392 414 - -
Hepe05g0517 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 201 IPR013083 -
Hepe05g0517 425 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
Hepe05g0517 425 FunFam Zinc finger family protein 122 195 - -
Hepe05g0517 425 MobiDBLite consensus disorder prediction 101 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1269 Hepe-Chr2:15841140 Hepe05g0517 Hepe-Chr5:7080281 7.13e-36 dispersed
Hepe02g1648 Hepe-Chr2:22270898 Hepe05g0517 Hepe-Chr5:7080281 1.44e-06 dispersed
Hepe04g1181 Hepe-Chr4:67074355 Hepe05g0517 Hepe-Chr5:7080281 4.82e-26 dispersed
Hepe05g0517 Hepe-Chr5:7080281 Hepe07g1920 Hepe-Chr7:62984019 8.20e-25 dispersed
Hepe05g0517 Hepe-Chr5:7080281 Hepe10g0677 Hepe-Chr10:8965466 5.53e-29 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0517 K10666 - csv:101220497 780.4