Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe05g0517 | ATGGGTGACGAAATCTTTGATGCAATGAACCTTGACTTGAATCTGGGTCCTGTTCCAGAGCCGCATTCGAACTTGGTTCCAAATGAAGATGTGAATTTAGCTGATTTGACAGAGGATCCTGTTCATAGATTTGGGGAAGCTATCAGGTTTAGGACCAGACATCGATGGAGAAGGCGTCAAGTCCAAATTCCTTCTGAGACTCAGCATATTTCAATAGAATTGAGTGAAATTATGGTCAATTCAGGCAATGGGAATTCATTACAGCCATTACAGGCTGGTGAGGGTAGTATTACTGCTGAGGAAAGGAAAAATGAGGCGGGAAAAACATGTGAAATTAACAATGAAGCTTTGGAAGATGAAAAGGCAGAGAATAAGAGTGATGTCGAAAAGGGCAGTGACTCTGATGGGAGTTTCTTTGATTGCAATATATGTTTGGACTTGGCTAGAGACCCTGTTGTAACTTGTTGCGGTCATCTATACTGCTGGCCTTGCCTGTATCGATGGTTACATCTACATTCAGATGCCAAAGAATGTCCTGTATGTAAAGGAGAGGTTACTACGAAGACTGTGACTCCAATTTATGGGCGTGGCAGCAATACCCCTGTGACAGAGGAGGATGCTACACTTAAGATTCCTCTAAGGCCCCATGCTCGGAAGGTTGAAAGTTTGAGGCAAACCATCCAGAGGACTGCATTTAGTTTCCCAGTGGAGGAGATGATTCGTCGATTGGGAAACAGATTTGATTTCAATCGGGACCTTGACCAACCGCCGGAGCCAGACACTTCACATGAAACATTTGGTAGATCTCCAACCTTGTTGAATAGGATTTTAACATCCAGGGGAATTCGTAGAGAACAAATTTCACTGCCCTCACATGATGATGTAGGAGATTTAGCACACACTGATGTATCAGGCATTGAGGCAGGGGAAACCCGTCTTCAATCTCTCCCAGTGCTTCGATCATTACTACACCGGACAAGAGTTTCTTCTCTTACATCTGCCTTTAATTCTGCTGATAGGCTTCCAGAGGGTTTTTTATATACCGATCCGCTCATTCCTAGAAGTCAAGAGCAGCCTCCTCCACCTGTCGAGGATAGAGATTCTTTCTCTAGCATTGCTGCTGTTATCAATTCAGAGAGTCAACTGGACACTGCTGTAGAGATTGATTCCATGGTCTCCCTTTCAACATCATCATCCAGAAGAAGAAATGATCCTTTACAGGTTTCTGATGTAGACAGTGGAAACTCTCGGGCACCCAGACGGAGAAGATTGGCTTGA | 1278 | 44.13 | MGDEIFDAMNLDLNLGPVPEPHSNLVPNEDVNLADLTEDPVHRFGEAIRFRTRHRWRRRQVQIPSETQHISIELSEIMVNSGNGNSLQPLQAGEGSITAEERKNEAGKTCEINNEALEDEKAENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSDAKECPVCKGEVTTKTVTPIYGRGSNTPVTEEDATLKIPLRPHARKVESLRQTIQRTAFSFPVEEMIRRLGNRFDFNRDLDQPPEPDTSHETFGRSPTLLNRILTSRGIRREQISLPSHDDVGDLAHTDVSGIEAGETRLQSLPVLRSLLHRTRVSSLTSAFNSADRLPEGFLYTDPLIPRSQEQPPPPVEDRDSFSSIAAVINSESQLDTAVEIDSMVSLSTSSSRRRNDPLQVSDVDSGNSRAPRRRRLA | 425 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 7080281 | 7082872 | - | Hsped.05g05170.1 | Hepe05g0517 | 569782 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe05g0517 | 425 | MobiDBLite | consensus disorder prediction | 250 | 270 | - | - | |
Hepe05g0517 | 425 | MobiDBLite | consensus disorder prediction | 392 | 425 | - | - | |
Hepe05g0517 | 425 | SUPERFAMILY | RING/U-box | 137 | 194 | - | - | |
Hepe05g0517 | 425 | SMART | ring_2 | 141 | 181 | IPR001841 | - | |
Hepe05g0517 | 425 | Pfam | Zinc finger, C3HC4 type (RING finger) | 141 | 181 | IPR018957 | GO:0046872(InterPro) | |
Hepe05g0517 | 425 | ProSitePatterns | Zinc finger RING-type signature. | 156 | 165 | IPR017907 | - | |
Hepe05g0517 | 425 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 108 | 292 | IPR045103 | GO:0005783(InterPro)|GO:0006511(InterPro)|GO:0006511(PANTHER)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER) | |
Hepe05g0517 | 425 | CDD | RING-HC_AtRMA-like | 139 | 182 | - | - | |
Hepe05g0517 | 425 | MobiDBLite | consensus disorder prediction | 392 | 414 | - | - | |
Hepe05g0517 | 425 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 91 | 201 | IPR013083 | - | |
Hepe05g0517 | 425 | ProSiteProfiles | Zinc finger RING-type profile. | 141 | 182 | IPR001841 | - | |
Hepe05g0517 | 425 | FunFam | Zinc finger family protein | 122 | 195 | - | - | |
Hepe05g0517 | 425 | MobiDBLite | consensus disorder prediction | 101 | 133 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe02g1269 | Hepe-Chr2:15841140 | Hepe05g0517 | Hepe-Chr5:7080281 | 7.13e-36 | dispersed | |
Hepe02g1648 | Hepe-Chr2:22270898 | Hepe05g0517 | Hepe-Chr5:7080281 | 1.44e-06 | dispersed | |
Hepe04g1181 | Hepe-Chr4:67074355 | Hepe05g0517 | Hepe-Chr5:7080281 | 4.82e-26 | dispersed | |
Hepe05g0517 | Hepe-Chr5:7080281 | Hepe07g1920 | Hepe-Chr7:62984019 | 8.20e-25 | dispersed | |
Hepe05g0517 | Hepe-Chr5:7080281 | Hepe10g0677 | Hepe-Chr10:8965466 | 5.53e-29 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe05g0517 | K10666 | - | csv:101220497 | 780.4 |