Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0523 ATGATCCGAAGTGAAGGGCAAAAGGGTACAAAGTTCGGCGAAGACCGAAAAGTTAGAGTGGTGGATCCAAGGAGAATGCGACGCGTGGCAGATAGAGAGACCGTAGATGAGAGATTAAAAATAGACGGTCAGGATTTACGCAAAGGTATCATCAATCAATCAACCAATCAATCGTTTCTTACATCTTTTGATTTTGATTTTCTCCGAGGAGACGCTCGCAACTGTTTGATCTTGTTCTTCGTGTTATTACTATTGAAGATGGCAGATTCCGAGGATATTCAGCCTCTCGTTTGCGATAATGGAACTGGAATGGTCAAGGCTGGATTTGCTGGAGACGATGCTCCAAGGGCTGTGTTCCCTAGCATTGTAGGTCGCCCCAGGCACACTGGTGTTATGGTTGGTATGGGCCAAAAGGATGCCTATGTTGGTGATGAAGCTCAATCGAAGAGAGGTATTTTGACTTTGAAATATCCCATTGAGCATGGTATCGTTAGCAATTGGGATGATATGGAGAAAATTTGGCATCATACTTTCTACAACGAGCTTCGAGTTGCTCCAGAAGAACATCCAGTTCTGCTCACAGAAGCACCCTTGAATCCCAAGGCGAACAGAGAGAAAATGACCCAAATCATGTTTGAGACTTTCAACACTCCCGCTATGTATGTTGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGCACAACTGGGATCGTTATGGATTCTGGTGATGGTGTCAGCCACACAGTTCCAATCTACGAAGGGTATGCTCTCCCACATGCCATCCTCCGTCTAGATCTTGCTGGCCGTGATCTCACAGATGATGATGGTAGATAA 840 45.71 MIRSEGQKGTKFGEDRKVRVVDPRRMRRVADRETVDERLKIDGQDLRKGIINQSTNQSFLTSFDFDFLRGDARNCLILFFVLLLLKMADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDDDGR 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7215796 7219236 + Hsped.05g05230.1 Hepe05g0523 569788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0523 279 SUPERFAMILY Actin-like ATPase domain 234 275 IPR043129 -
Hepe05g0523 279 Pfam Actin 91 275 IPR004000 -
Hepe05g0523 279 PANTHER ACTIN 94 275 IPR004000 GO:0005737(PANTHER)
Hepe05g0523 279 Gene3D Actin; Chain A, domain 2 122 159 - -
Hepe05g0523 279 CDD NBD_sugar-kinase_HSP70_actin 96 269 - -
Hepe05g0523 279 SMART actin_3 93 279 IPR004000 -
Hepe05g0523 279 FunFam Actin, alpha skeletal muscle 89 252 - -
Hepe05g0523 279 FunFam Actin, alpha skeletal muscle 122 159 - -
Hepe05g0523 279 PRINTS Actin signature 228 247 IPR004000 -
Hepe05g0523 279 PRINTS Actin signature 149 171 IPR004000 -
Hepe05g0523 279 PRINTS Actin signature 203 216 IPR004000 -
Hepe05g0523 279 PRINTS Actin signature 114 123 IPR004000 -
Hepe05g0523 279 PRINTS Actin signature 137 148 IPR004000 -
Hepe05g0523 279 ProSitePatterns Actins and actin-related proteins signature. 192 204 IPR020902 -
Hepe05g0523 279 ProSitePatterns Actins signature 1. 141 151 IPR004001 -
Hepe05g0523 279 Gene3D - 95 240 - -
Hepe05g0523 279 SUPERFAMILY Actin-like ATPase domain 92 240 IPR043129 -
Hepe05g0523 279 Gene3D - 241 269 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0523 Hepe-Chr5:7215796 Hepe08g1258 Hepe-Chr8:13509601 4.68e-134 dispersed
Hepe05g0523 Hepe-Chr5:7215796 Hepe09g1698 Hepe-Chr9:51555315 4.46e-38 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0523 K10355 - csv:101214247 387.882