Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0523 ATGATCCGAAGTGAAGGGCAAAAGGGTACAAAGTTCGGCGAAGACCGAAAAGTTAGAGTGGTGGATCCAAGGAGAATGCGACGCGTGGCAGATAGAGAGACCGTAGATGAGAGATTAAAAATAGACGGTCAGGATTTACGCAAAGGTATCATCAATCAATCAACCAATCAATCGTTTCTTACATCTTTTGATTTTGATTTTCTCCGAGGAGACGCTCGCAACTGTTTGATCTTGTTCTTCGTGTTATTACTATTGAAGATGGCAGATTCCGAGGATATTCAGCCTCTCGTTTGCGATAATGGAACTGGAATGGTCAAGGCTGGATTTGCTGGAGACGATGCTCCAAGGGCTGTGTTCCCTAGCATTGTAGGTCGCCCCAGGCACACTGGTGTTATGGTTGGTATGGGCCAAAAGGATGCCTATGTTGGTGATGAAGCTCAATCGAAGAGAGGTATTTTGACTTTGAAATATCCCATTGAGCATGGTATCGTTAGCAATTGGGATGATATGGAGAAAATTTGGCATCATACTTTCTACAACGAGCTTCGAGTTGCTCCAGAAGAACATCCAGTTCTGCTCACAGAAGCACCCTTGAATCCCAAGGCGAACAGAGAGAAAATGACCCAAATCATGTTTGAGACTTTCAACACTCCCGCTATGTATGTTGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGCACAACTGGGATCGTTATGGATTCTGGTGATGGTGTCAGCCACACAGTTCCAATCTACGAAGGGTATGCTCTCCCACATGCCATCCTCCGTCTAGATCTTGCTGGCCGTGATCTCACAGATGATGATGGTAGATAA 840 45.71 MIRSEGQKGTKFGEDRKVRVVDPRRMRRVADRETVDERLKIDGQDLRKGIINQSTNQSFLTSFDFDFLRGDARNCLILFFVLLLLKMADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDDDGR 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7215796 7219236 + Hsped.05g05230.1 Hepe05g0523 569788

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0523 279 SUPERFAMILY Actin-like ATPase domain 234 275 IPR043129 -
Hepe05g0523 279 Pfam Actin 91 275 IPR004000 -
Hepe05g0523 279 PANTHER ACTIN 94 275 IPR004000 GO:0005737(PANTHER)
Hepe05g0523 279 Gene3D Actin; Chain A, domain 2 122 159 - -
Hepe05g0523 279 CDD NBD_sugar-kinase_HSP70_actin 96 269 - -
Hepe05g0523 279 SMART actin_3 93 279 IPR004000 -
Hepe05g0523 279 FunFam Actin, alpha skeletal muscle 89 252 - -
Hepe05g0523 279 FunFam Actin, alpha skeletal muscle 122 159 - -
Hepe05g0523 279 PRINTS Actin signature 228 247 IPR004000 -
Hepe05g0523 279 PRINTS Actin signature 149 171 IPR004000 -
Hepe05g0523 279 PRINTS Actin signature 203 216 IPR004000 -
Hepe05g0523 279 PRINTS Actin signature 114 123 IPR004000 -
Hepe05g0523 279 PRINTS Actin signature 137 148 IPR004000 -
Hepe05g0523 279 ProSitePatterns Actins and actin-related proteins signature. 192 204 IPR020902 -
Hepe05g0523 279 ProSitePatterns Actins signature 1. 141 151 IPR004001 -
Hepe05g0523 279 Gene3D - 95 240 - -
Hepe05g0523 279 SUPERFAMILY Actin-like ATPase domain 92 240 IPR043129 -
Hepe05g0523 279 Gene3D - 241 269 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0523 K10355 - - csv:101214247 387.882
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0523 Hepe-Chr5:7215796 Hepe08g1258 Hepe-Chr8:13509601 4.68e-134 dispersed
Hepe05g0523 Hepe-Chr5:7215796 Hepe09g1698 Hepe-Chr9:51555315 4.46e-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1271 . . . . Bpe04g01456 Bpe03g01148 . . Cmo06g00095 Cmo14g00419 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g02242 . Blo09g00434 Bda03g01592 Bda05g01088 . . . . Sed14g0483 . . Cma06g00102 . Car06g00084 Car14g00382 Cpe03g00368 . Bhi11g02537 Tan08g1503 Cmetu10g1839 Lac10g2624 Hepe05g0523 . . Cla10g01670 Cam10g1718 Cec10g1770 Cco10g1738 Clacu10g1739 Cmu10g2489 Cre10g1871 Lsi03g01737 Csa03g03574 Chy04g01779 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe04g1131 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.5e-213 738.0
Hepe04g0855 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 3.3e-213 737.6
Hepe08g1258 . 1 377 Cytoskeleton Gene Families AT2G37620 95.2 5.6e-213 736.9
Hepe02g0785 . 1 377 Cytoskeleton Gene Families AT2G37620 93.9 4.7e-212 733.8
Hepe01g0800 . 1 357 Cytoskeleton Gene Families AT2G37620 94.7 1.1e-197 686.0
Hepe05g0523 . 87 275 Cytoskeleton Gene Families AT2G37620 97.4 2.1e-106 382.9
Hepe01g0302 . 2 177 Cytoskeleton Gene Families AT2G37620 92.6 1.7e-92 336.7
Hepe04g0054 . 1 110 Cytoskeleton Gene Families AT2G37620 94.5 2.5e-56 216.5
Hepe06g0319 . 1 107 Cytoskeleton Gene Families AT2G37620 92.5 5.9e-53 205.3
Hepe04g0855 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 1.2e-212 735.7
Hepe08g1258 . 1 377 Cytoskeleton Gene Families AT5G59370 94.7 1.5e-210 728.8
Hepe04g1131 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.4e-210 727.6
Hepe02g0785 . 1 377 Cytoskeleton Gene Families AT5G59370 93.4 1.7e-209 725.3
Hepe01g0800 . 1 357 Cytoskeleton Gene Families AT5G59370 96.4 5.4e-200 693.7
Hepe05g0523 . 87 275 Cytoskeleton Gene Families AT5G59370 98.4 4.1e-107 385.2
Hepe01g0302 . 2 177 Cytoskeleton Gene Families AT5G59370 90.3 6.0e-90 328.2
Hepe04g0054 . 1 110 Cytoskeleton Gene Families AT5G59370 92.7 2.8e-55 213.0
Hepe06g0319 . 1 107 Cytoskeleton Gene Families AT5G59370 90.7 6.5e-52 201.8
Hepe04g0855 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 5.6e-213 736.9
Hepe08g1258 . 1 377 Cytoskeleton Gene Families AT3G46520 95.0 6.9e-211 729.9
Hepe04g1131 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.5e-210 728.8
Hepe02g0785 . 1 377 Cytoskeleton Gene Families AT3G46520 93.6 7.6e-210 726.5
Hepe01g0800 . 1 357 Cytoskeleton Gene Families AT3G46520 96.1 1.6e-199 692.2
Hepe05g0523 . 87 275 Cytoskeleton Gene Families AT3G46520 98.4 4.1e-107 385.2
Hepe01g0302 . 2 177 Cytoskeleton Gene Families AT3G46520 90.9 2.7e-90 329.3
Hepe04g0054 . 1 110 Cytoskeleton Gene Families AT3G46520 92.7 2.8e-55 213.0
Hepe06g0319 . 1 107 Cytoskeleton Gene Families AT3G46520 90.7 6.5e-52 201.8
Hepe04g0855 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 7.3e-213 736.5
Hepe04g1131 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.6e-213 736.1
Hepe08g1258 . 1 377 Cytoskeleton Gene Families AT3G12110 95.2 2.1e-212 734.9
Hepe02g0785 . 1 377 Cytoskeleton Gene Families AT3G12110 94.7 3.6e-212 734.2
Hepe01g0800 . 1 357 Cytoskeleton Gene Families AT3G12110 95.5 4.6e-199 690.6
Hepe05g0523 . 87 275 Cytoskeleton Gene Families AT3G12110 98.9 1.9e-107 386.3
Hepe01g0302 . 2 177 Cytoskeleton Gene Families AT3G12110 92.0 3.8e-92 335.5
Hepe04g0054 . 1 110 Cytoskeleton Gene Families AT3G12110 93.6 1.5e-56 217.2
Hepe06g0319 . 1 107 Cytoskeleton Gene Families AT3G12110 92.5 2.6e-53 206.5
Hepe08g1258 . 1 377 Cytoskeleton Gene Families AT3G18780 93.4 2.2e-209 724.9
Hepe04g1131 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.9e-209 723.8
Hepe04g0855 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.4e-208 721.5
Hepe02g0785 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 5.4e-208 720.3
Hepe01g0800 . 1 357 Cytoskeleton Gene Families AT3G18780 92.2 3.1e-195 677.9
Hepe05g0523 . 87 275 Cytoskeleton Gene Families AT3G18780 93.1 1.2e-103 373.6
Hepe01g0302 . 1 177 Cytoskeleton Gene Families AT3G18780 91.5 1.1e-91 334.0
Hepe04g0054 . 2 110 Cytoskeleton Gene Families AT3G18780 91.7 1.7e-55 213.8
Hepe06g0319 . 1 107 Cytoskeleton Gene Families AT3G18780 89.7 1.7e-52 203.8
Hepe08g1258 . 1 377 Cytoskeleton Gene Families AT1G49240 93.6 7.6e-210 726.5
Hepe04g1131 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.7e-209 725.3
Hepe02g0785 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 1.9e-208 721.8
Hepe04g0855 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 5.4e-208 720.3
Hepe01g0800 . 1 357 Cytoskeleton Gene Families AT1G49240 92.4 1.1e-195 679.5
Hepe05g0523 . 87 275 Cytoskeleton Gene Families AT1G49240 93.7 4.3e-104 375.2
Hepe01g0302 . 1 177 Cytoskeleton Gene Families AT1G49240 91.5 1.1e-91 334.0
Hepe04g0054 . 2 110 Cytoskeleton Gene Families AT1G49240 91.7 1.7e-55 213.8
Hepe06g0319 . 1 107 Cytoskeleton Gene Families AT1G49240 89.7 1.7e-52 203.8
Hepe04g1131 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.4e-217 749.6
Hepe08g1258 . 1 377 Cytoskeleton Gene Families AT5G09810 98.1 1.9e-216 748.4
Hepe02g0785 . 1 377 Cytoskeleton Gene Families AT5G09810 95.2 5.6e-213 736.9
Hepe04g0855 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.6e-212 734.2
Hepe01g0800 . 1 357 Cytoskeleton Gene Families AT5G09810 95.0 5.1e-198 687.2
Hepe05g0523 . 87 275 Cytoskeleton Gene Families AT5G09810 98.4 9.2e-107 384.0
Hepe01g0302 . 1 177 Cytoskeleton Gene Families AT5G09810 97.2 1.6e-95 346.7
Hepe04g0054 . 1 110 Cytoskeleton Gene Families AT5G09810 92.7 1.3e-55 214.2
Hepe06g0319 . 1 107 Cytoskeleton Gene Families AT5G09810 90.7 2.9e-52 203.0
Hepe08g2631 . 1 131 Cytoskeleton Gene Families AT2G19760 77.1 6.8e-57 216.9
Hepe03g1504 . 237 367 Cytoskeleton Gene Families AT2G19760 73.3 9.8e-56 213.0
Hepe02g1450 . 1 131 Cytoskeleton Gene Families AT2G19760 73.3 4.1e-54 207.6
Hepe03g1504 . 237 367 Cytoskeleton Gene Families AT4G29350 74.8 2.6e-56 214.9
Hepe08g2631 . 1 131 Cytoskeleton Gene Families AT4G29350 76.3 7.5e-56 213.4
Hepe02g1450 . 1 131 Cytoskeleton Gene Families AT4G29350 72.5 4.6e-53 204.1
Hepe03g1504 . 237 367 Cytoskeleton Gene Families AT4G29340 73.9 9.1e-57 216.5
Hepe08g2631 . 1 131 Cytoskeleton Gene Families AT4G29340 71.6 6.5e-55 210.3
Hepe02g1450 . 1 131 Cytoskeleton Gene Families AT4G29340 70.1 1.2e-53 206.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276