Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0540 ATGTATTATGATAGTGAGGAGAGGGCGTCCAACTTACCATATAGGTTGCAAGATAAGCGGCACAATGGACAAAATGTGTGGAGAATGCATCCTCCAAAGTCCACGAGTTCTGTTGAGGAAACCCTAAGTCGCGGCAATATTGTGGATTCATTCAAACTCCTAAACTTCTCCGAACGACAAAACAGTCTGAGGTTGCCGAGAAGAAAATTGTTCGAAGCTTGTCTGGATATGTACGAAGCTCTTCGCGACACCGTCCGCAAAATGGAAACACTATTCCCAGAGGAATCAACCAACGAACACAAAACCACGACAGAGACACAAACCGGTCGAACTTCTTCGACATTCTGTGATATGGAAAACACCATCAAAGCCGACACCGGTAAAACACCGGTACCAGGCGGCGCGGTCCATCCATTGACTCGAAACACCATAGAAGGACTGGAACATATTTTGAAAGATCATCCAAAGATCGAGCGAGGAGCCGACTTCGAAGCCGAACTCACTCGAGTAATTGAGCTCCTTGAGTCAAATCTGGAAGCAAAATCAAAATTATACAAAGACCCACAACTGAGTTCGATCTTCATGATGAACAATGGCCGATACATCTTGCAGAAAATCAAAGGATCCGAGGAGATTCACGAACTGGTCGGCGATACGTGGTACCGGAAGAGATCTTCGGATCTCCGTCAATATCATAAGAGTTACCAGAGAGAGACGTGGGGGAGATTGTTGCAATTTTTGAACCACGACGGAATGACATCGGCGCCGAACGGGAAACCGCTCAAGTCGGTGCTCAAGGATAGGTTTAAAGGATTCAACACCCTGTTCGAAGAGATTCACAAAACACAGAGCTCCTGGATCATAACCGATGAGCAGCTTCAATCCGAGCTCCGAGTATCGATATCGTCCCTGATGATTCCGGCCTACAGATCATTCCTAGGGAGGTTTGCGCAGTACTTGAATCCGGGGAGACAAACGGACAAATACATTAAGTTTCAGCCTGAAGATATAGAAGCTTACATTGATGATCTATTCCATGGACATCCAACCAAGAACAATATAACTTCAATTGATGAAGGAGGGAACTGCCACATGGGCTACATTTTGAGGCAAGTTCCAGAAGAGTCGACGTCGATCAGCAACCTAGTTTCCAAGTTCCAGAAGAGTCGACGTCGACCCATCAAGAAGATGAACCGCTTGAATCGAGTCCGTACAAATCAAGACATTTGGAGATTCAAAACATGCTTAGAGCTTCCGGGATGCAGGCCTGAATCTGCATCCAAAGGTGAAAGAGCTTCAGGTAAACATTTCGCCAGTGCGTTGCTACTGCTTTACCAGATCCATCCCTGA 1350 46.15 MYYDSEERASNLPYRLQDKRHNGQNVWRMHPPKSTSSVEETLSRGNIVDSFKLLNFSERQNSLRLPRRKLFEACLDMYEALRDTVRKMETLFPEESTNEHKTTTETQTGRTSSTFCDMENTIKADTGKTPVPGGAVHPLTRNTIEGLEHILKDHPKIERGADFEAELTRVIELLESNLEAKSKLYKDPQLSSIFMMNNGRYILQKIKGSEEIHELVGDTWYRKRSSDLRQYHKSYQRETWGRLLQFLNHDGMTSAPNGKPLKSVLKDRFKGFNTLFEEIHKTQSSWIITDEQLQSELRVSISSLMIPAYRSFLGRFAQYLNPGRQTDKYIKFQPEDIEAYIDDLFHGHPTKNNITSIDEGGNCHMGYILRQVPEESTSISNLVSKFQKSRRRPIKKMNRLNRVRTNQDIWRFKTCLELPGCRPESASKGERASGKHFASALLLLYQIHP 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7463911 7466572 + Hsped.05g05400.1 Hepe05g0540 569805

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0540 449 SUPERFAMILY Cullin repeat-like 53 346 IPR016159 -
Hepe05g0540 449 PANTHER EXOCYST COMPLEX PROTEIN EXO70 51 347 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(PANTHER)|GO:0006887(InterPro)
Hepe05g0540 449 MobiDBLite consensus disorder prediction 11 25 - -
Hepe05g0540 449 MobiDBLite consensus disorder prediction 90 112 - -
Hepe05g0540 449 Pfam Exo70 exocyst complex subunit C-terminal 44 343 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Hepe05g0540 449 Gene3D Exocyst complex component Exo70 41 354 - -
Hepe05g0540 449 MobiDBLite consensus disorder prediction 1 40 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0540 K07195 - - csv:101206040 404.831
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0540 Hepe-Chr5:7463911 Hepe05g1167 Hepe-Chr5:57304545 5.09e-90 dispersed
Hepe05g0540 Hepe-Chr5:7463911 Hepe09g0051 Hepe-Chr9:422913 1.25e-52 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe01g1104 . 41 684 EXO70 exocyst subunit family AT5G03540 76.1 1.4e-283 972.2
Hepe04g1072 . 1 637 EXO70 exocyst subunit family AT5G03540 69.8 1.3e-257 885.9
Hepe04g1072 . 1 637 EXO70 exocyst subunit family AT5G52340 78.2 2.8e-289 991.1
Hepe01g1104 . 43 684 EXO70 exocyst subunit family AT5G52340 73.5 6.4e-270 926.8
Hepe04g1072 . 145 630 EXO70 exocyst subunit family AT5G52350 62.2 3.7e-171 598.6
Hepe01g1104 . 178 684 EXO70 exocyst subunit family AT5G52350 58.0 3.4e-164 575.5
Hepe10g1367 . 1 630 EXO70 exocyst subunit family AT5G58430 67.1 1.0e-248 856.3
Hepe10g1367 . 1 623 EXO70 exocyst subunit family AT1G07000 52.7 9.3e-178 620.5
Hepe05g1167 . 58 661 EXO70 exocyst subunit family AT5G13150 52.1 8.3e-172 600.9
Hepe02g2406 . 115 722 EXO70 exocyst subunit family AT5G13990 52.2 8.5e-183 637.5
Hepe05g0540 . 50 353 EXO70 exocyst subunit family AT5G13990 54.7 2.3e-95 347.1
Hepe02g1550 . 9 606 EXO70 exocyst subunit family AT1G72470 64.4 1.5e-213 739.6
Hepe02g1550 . 9 604 EXO70 exocyst subunit family AT1G54090 61.2 6.0e-204 707.6
Hepe02g1550 . 9 605 EXO70 exocyst subunit family AT3G14090 64.2 1.1e-218 756.5
Hepe07g2107 . 19 656 EXO70 exocyst subunit family AT5G50380 63.4 7.0e-230 793.9
Hepe09g0051 . 14 651 EXO70 exocyst subunit family AT5G50380 62.0 1.8e-225 779.2
Hepe10g0323 . 16 682 EXO70 exocyst subunit family AT4G31540 73.4 1.8e-294 1008.4
Hepe01g0852 . 54 612 EXO70 exocyst subunit family AT2G39380 50.2 6.7e-150 528.1
Hepe05g0203 . 36 638 EXO70 exocyst subunit family AT3G09520 54.2 1.4e-176 616.7
Hepe05g0204 . 1 638 EXO70 exocyst subunit family AT3G09520 51.5 1.6e-172 603.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011360 0 1 0 0 0 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 1 0 31