Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe05g0545 | ATGGAAATGGATTGCAGTTCTTTGACTGAGTCTGGTGGGTCTTCCACTTCCTCCCCTCCAAATTCATCAGCTGAATCTCTCAATGGCCTCAAATTTGGACAGAAAATTTACTTTGAAGATGTGGGTATTGGAGAACTTCCCAAATCAAATGGGGGATCTTTCTCATCTTCAGCTGTAATTGCTTCAACAACACCCACCAAGAAACCTAGAGGGGGAGGAGGGCTTGTTCAAGCAGCTCAGCCCCCTAGATGTCAGGTTGAAGGCTGTAAAGTAGATCTAAGTGATGCTAAGGCCTACTATTCCAGACACAAAGTTTGTACTATGCATTCCAAATCCCCTAAGGTCATTGTTAATGGTCTTGAGCAAAGGTTTTGCCAACAGTGTAGCAGATTTCATCAGCTTCCTGAATTTGATCAAGGAAAACGTAGTTGTCGCCGACGACTGGCTGGTCATAATGAGCGCCGTAGGAAGCCTCCACCTGGGTCACTATTATCCACTCGTTATGGTCGCTTCTCTTCATCTATTTTTGGTTAG | 534 | 44.76 | MEMDCSSLTESGGSSTSSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSNGGSFSSSAVIASTTPTKKPRGGGGLVQAAQPPRCQVEGCKVDLSDAKAYYSRHKVCTMHSKSPKVIVNGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSLLSTRYGRFSSSIFG | 177 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 7552690 | 7557585 | + | Hsped.05g05450.1 | Hepe05g0545 | 569810 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe05g0545 | 177 | Gene3D | - | 75 | 145 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Hepe05g0545 | 177 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 13 | 159 | IPR044817 | GO:0003677(InterPro) | |
Hepe05g0545 | 177 | FunFam | Squamosa promoter-binding-like protein 14 | 75 | 145 | - | - | |
Hepe05g0545 | 177 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Hepe05g0545 | 177 | Pfam | SBP domain | 84 | 157 | IPR004333 | GO:0003677(InterPro) | |
Hepe05g0545 | 177 | SUPERFAMILY | SBT domain | 81 | 162 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Hepe05g0545 | 177 | ProSiteProfiles | Zinc finger SBP-type profile. | 81 | 158 | IPR004333 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe05g0545 | Hepe-Chr5:7552690 | Hepe05g2080 | Hepe-Chr5:71277400 | 3.12e-37 | dispersed | |
Hepe05g0545 | Hepe-Chr5:7552690 | Hepe09g0288 | Hepe-Chr9:2465397 | 2.29e-36 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55582 | PF03110 | SBP | 2.20E-33 | No_clan | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe05g0545 | - | - | - | 0.0 |