Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0545 ATGGAAATGGATTGCAGTTCTTTGACTGAGTCTGGTGGGTCTTCCACTTCCTCCCCTCCAAATTCATCAGCTGAATCTCTCAATGGCCTCAAATTTGGACAGAAAATTTACTTTGAAGATGTGGGTATTGGAGAACTTCCCAAATCAAATGGGGGATCTTTCTCATCTTCAGCTGTAATTGCTTCAACAACACCCACCAAGAAACCTAGAGGGGGAGGAGGGCTTGTTCAAGCAGCTCAGCCCCCTAGATGTCAGGTTGAAGGCTGTAAAGTAGATCTAAGTGATGCTAAGGCCTACTATTCCAGACACAAAGTTTGTACTATGCATTCCAAATCCCCTAAGGTCATTGTTAATGGTCTTGAGCAAAGGTTTTGCCAACAGTGTAGCAGATTTCATCAGCTTCCTGAATTTGATCAAGGAAAACGTAGTTGTCGCCGACGACTGGCTGGTCATAATGAGCGCCGTAGGAAGCCTCCACCTGGGTCACTATTATCCACTCGTTATGGTCGCTTCTCTTCATCTATTTTTGGTTAG 534 44.76 MEMDCSSLTESGGSSTSSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSNGGSFSSSAVIASTTPTKKPRGGGGLVQAAQPPRCQVEGCKVDLSDAKAYYSRHKVCTMHSKSPKVIVNGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSLLSTRYGRFSSSIFG 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7552690 7557585 + Hsped.05g05450.1 Hepe05g0545 569810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0545 177 Gene3D - 75 145 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe05g0545 177 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 13 159 IPR044817 GO:0003677(InterPro)
Hepe05g0545 177 FunFam Squamosa promoter-binding-like protein 14 75 145 - -
Hepe05g0545 177 MobiDBLite consensus disorder prediction 1 27 - -
Hepe05g0545 177 Pfam SBP domain 84 157 IPR004333 GO:0003677(InterPro)
Hepe05g0545 177 SUPERFAMILY SBT domain 81 162 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe05g0545 177 ProSiteProfiles Zinc finger SBP-type profile. 81 158 IPR004333 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0545 Hepe-Chr5:7552690 Hepe05g2080 Hepe-Chr5:71277400 3.12e-37 dispersed
Hepe05g0545 Hepe-Chr5:7552690 Hepe09g0288 Hepe-Chr9:2465397 2.29e-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55582 PF03110 SBP 2.20E-33 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0545 - - - 0.0