Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0545 ATGGAAATGGATTGCAGTTCTTTGACTGAGTCTGGTGGGTCTTCCACTTCCTCCCCTCCAAATTCATCAGCTGAATCTCTCAATGGCCTCAAATTTGGACAGAAAATTTACTTTGAAGATGTGGGTATTGGAGAACTTCCCAAATCAAATGGGGGATCTTTCTCATCTTCAGCTGTAATTGCTTCAACAACACCCACCAAGAAACCTAGAGGGGGAGGAGGGCTTGTTCAAGCAGCTCAGCCCCCTAGATGTCAGGTTGAAGGCTGTAAAGTAGATCTAAGTGATGCTAAGGCCTACTATTCCAGACACAAAGTTTGTACTATGCATTCCAAATCCCCTAAGGTCATTGTTAATGGTCTTGAGCAAAGGTTTTGCCAACAGTGTAGCAGATTTCATCAGCTTCCTGAATTTGATCAAGGAAAACGTAGTTGTCGCCGACGACTGGCTGGTCATAATGAGCGCCGTAGGAAGCCTCCACCTGGGTCACTATTATCCACTCGTTATGGTCGCTTCTCTTCATCTATTTTTGGTTAG 534 44.76 MEMDCSSLTESGGSSTSSPPNSSAESLNGLKFGQKIYFEDVGIGELPKSNGGSFSSSAVIASTTPTKKPRGGGGLVQAAQPPRCQVEGCKVDLSDAKAYYSRHKVCTMHSKSPKVIVNGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSLLSTRYGRFSSSIFG 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7552690 7557585 + Hsped.05g05450.1 Hepe05g0545 569810

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0545 177 Gene3D - 75 145 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe05g0545 177 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 13 159 IPR044817 GO:0003677(InterPro)
Hepe05g0545 177 FunFam Squamosa promoter-binding-like protein 14 75 145 - -
Hepe05g0545 177 MobiDBLite consensus disorder prediction 1 27 - -
Hepe05g0545 177 Pfam SBP domain 84 157 IPR004333 GO:0003677(InterPro)
Hepe05g0545 177 SUPERFAMILY SBT domain 81 162 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe05g0545 177 ProSiteProfiles Zinc finger SBP-type profile. 81 158 IPR004333 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0545 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0545 Hepe-Chr5:7552690 Hepe05g2080 Hepe-Chr5:71277400 3.12e-37 dispersed
Hepe05g0545 Hepe-Chr5:7552690 Hepe09g0288 Hepe-Chr9:2465397 2.29e-36 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g1180 . 180 1013 SBP-box Gene Family AT2G47070 55.7 3.3e-241 831.6
Hepe02g1180 . 25 1013 SBP-box Gene Family AT3G60030 54.9 9.0e-281 963.4
Hepe03g1119 . 15 163 SBP-box Gene Family AT5G50570 54.6 9.3e-40 161.4
Hepe02g1698 . 67 166 SBP-box Gene Family AT5G50570 67.0 7.3e-37 151.8
Hepe05g0545 . 5 177 SBP-box Gene Family AT3G57920 52.9 2.2e-38 156.8
Hepe07g2446 . 121 279 SBP-box Gene Family AT1G69170 53.5 3.2e-41 166.4
Hepe05g0545 . 10 176 SBP-box Gene Family AT2G42200 55.6 3.0e-41 166.4
Hepe02g1180 . 180 1013 SBP-box Gene Family AT2G47070 55.7 3.3e-241 831.6
Hepe07g2446 . 121 279 SBP-box Gene Family AT1G69170 53.5 3.2e-41 166.4
Hepe05g0545 . 10 176 SBP-box Gene Family AT2G42200 55.6 3.0e-41 166.4
Hepe02g1180 . 25 1013 SBP-box Gene Family AT3G60030 54.9 9.0e-281 963.4
Hepe03g1119 . 15 163 SBP-box Gene Family AT5G50570 54.6 9.3e-40 161.4
Hepe02g1698 . 67 166 SBP-box Gene Family AT5G50570 67.0 7.3e-37 151.8
Hepe03g1119 . 15 163 SBP-box Gene Family AT5G50670 54.6 9.3e-40 161.4
Hepe02g1698 . 67 166 SBP-box Gene Family AT5G50670 67.0 7.3e-37 151.8
Hepe05g0545 . 5 177 SBP-box Gene Family AT3G57920 52.9 2.2e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003140 4 1 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 3 2 2 2 1 1 3 1 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55582 PF03110 SBP 2.20E-33 No_clan Hepe TF