Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0559 ATGGAGATTAAAGTGGGGACTGTAAATGGATCCAGTCCCATTGGGCGTCAATCGGATGATACTGGACTTGAATCGCTTCAATTCTGCGAAGAAATTCAGGGGTTGATGACGATTCCGCCGGAAAATGCTAGCTCCTTCACTGCACTTCTGGAACTTCCGGCTACGAAGGCTTTAGAGCTTCTCCACTCGCCGGATTCCGACGGTGGTGGCGCCACGGCGGCGGTTGTGACTGTTCCGAAACCCTACTTCAATGCCTTCAATTGTAATTTGCCCTTCCCGACGAACTCGGCTCTAATTGAACGCGCCACCAAGTTCTCGGTCTTGGCTGAAGAGCACTCGCCGGAGACGACAAGTTCAGTGCTGTTGAATTCGACGGTCAATTTGGAGAAAGTGAAGAACGAGCCCACCACTGAAACCGATTCGAACCCTAATCACTTGCAGACTCTAATCTCCGATCCGACTGTCGAGAACAACACGAACCAGAGATCGGCGAAGAGGAAGGAGCGCGAGAAAAAGGGAAAAGGGTCATCAAAGAAGAGCAAGAACGAAAGCAACGAAGATGCTGAACAGCTTCCTTATGTTCATGTCAGAGCTCGCCGTGGTCAAGCGACGGACAGCCATAGCCTAGCAGAGAGAGCTAGGAGAGAGAAAATCAATGCTCGAATGAAGTTACTTCAAGAACTGGTCCCTGGATGCAATAAGATCTCAGGTACAGCCTTAGTGCTGGATGAAATCATCAACCATGTACAATCACTGCAGCGTCAAGTGGAGTTCTTGTCAATGAGGCTTGCAGCAGTTAACCCCAGAGTTGATTTCAACATTGATAGCATATTGGCTGCAGAAAACGAACCTGTACTCGAAAGCAGCTTTTCGACCATGGTTACGCCACTGATGTGGCCAGAAATCCCGCTCAGTGGAACCAGACAACAATATCAACCGCAATGGCATTTCGATGCTGCAGTTAACCAGCAAGCCTGGGCGAGGGATGAACATAATCATCATAATTTCAGCACTCCTGAAAACTCTCTCTTAAGTTATGACTCTTCAGCAAATTCAGCATCTCTGCACTCAAATCAATTGAAGATGGAGCTGTGA 1095 48.4 MEIKVGTVNGSSPIGRQSDDTGLESLQFCEEIQGLMTIPPENASSFTALLELPATKALELLHSPDSDGGGATAAVVTVPKPYFNAFNCNLPFPTNSALIERATKFSVLAEEHSPETTSSVLLNSTVNLEKVKNEPTTETDSNPNHLQTLISDPTVENNTNQRSAKRKEREKKGKGSSKKSKNESNEDAEQLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPVLESSFSTMVTPLMWPEIPLSGTRQQYQPQWHFDAAVNQQAWARDEHNHHNFSTPENSLLSYDSSANSASLHSNQLKMEL 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7858536 7863238 + Hsped.05g05590.1 Hepe05g0559 569824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0559 364 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 113 325 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Hepe05g0559 364 SMART finulus 208 258 IPR011598 GO:0046983(InterPro)
Hepe05g0559 364 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 202 252 IPR011598 GO:0046983(InterPro)
Hepe05g0559 364 MobiDBLite consensus disorder prediction 132 211 - -
Hepe05g0559 364 Pfam Helix-loop-helix DNA-binding domain 206 253 IPR011598 GO:0046983(InterPro)
Hepe05g0559 364 Gene3D - 199 272 IPR036638 GO:0046983(InterPro)
Hepe05g0559 364 MobiDBLite consensus disorder prediction 175 211 - -
Hepe05g0559 364 FunFam transcription factor bHLH48-like isoform X1 199 271 - -
Hepe05g0559 364 MobiDBLite consensus disorder prediction 132 160 - -
Hepe05g0559 364 Coils Coil 242 262 - -
Hepe05g0559 364 CDD bHLH_AtBPE_like 192 277 - -
Hepe05g0559 364 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 200 271 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0559 Hepe-Chr5:7858536 Hepe10g1832 Hepe-Chr10:55051312 4.84e-38 dispersed
Hepe05g0559 Hepe-Chr5:7858536 Hepe02g0492 Hepe-Chr2:4842224 1.54e-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55585 PF00010 HLH 1.40E-05 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0559 - - - 0.0