Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0565 ATGGATGACCCTTCCACTAACTTCTTCACAAATCTCTTCAAATTCAACTCTCCCACTAATTTCCACCACCACCCTTTTCCTTATTCCCAAAACCCTCCTCCCAATTTCTTCCCCACACACCTCCACGCGCCACCGTCCTCTCCTCCACTTCGGCAAGCCCTCCCCCTCCTCCGCCGCAGCCCCACCAGATCATCACAAGATCATCACCACCACCACCACCACCATCCCTTCCTTCCTTCTTCCTCCTCCTCCTCCGCCATGGAAATTGACAACAACAATAACAACAACAACAACGACGGAAACACCGAAAAGGATCGAAACGACGACGGTTCGGTCACGGTTGCACTCCACATAGGGCTTCCTAGCCCTAGTGCCTCGGAAATGGCCACGCTTTTGATGTCGTCTACTACGAATCACGATAACGATGACGAAGAAGAAGATTTAGAAGAGGAATTAGAAGATGAAGATGAAGATCATCAACAACAACAAGTTGCAATTTCTGGATTTTGTTTGAGTAGTAGACTCAACAAAGGACAATATTGGATCCCAACTCCTTCACAAATCCTCATTGGTCCTACTCAGTTCTCTTGTCCTGTTTGTTATAAGACCTTCAATAGATATAACAACATGCAGATGCACATGTGGGGGCATGGTTCTCAATACAGGCGAGGACCCGAGTCGTTAAGAGGCACGCAGCCAACCGGCATGCTTAGGCTGCCGTGCTATTGTTGTTCCCCCGGCTGTCGCAACAACATTGACCATCCAAGAGCCAAGCCCTTGAAGGATTTTAGAACCCTTCAAACTCACTACAAACGCAAGCATGGAATCAAGCCTTTCATGTGTAGAAAATGTGGCAAAGCCTTTGCTGTTAGAGGAGATTGGAGAACTCATGAGAAGAATTGTGGCAAGCTTTGGTATTGCATTTGTGGCTCTGATTTTAAGCACAAGAGATCCCTCAAAGATCACATCAAAGCCTTTGGAAATGGTCATGCTGCTTATAATAATAATAATACCAATAATAATAATGGTGACCATAATCATCATAATCATAATCATAATCATAATCATAATCATAATCATAATCATAATCATAATCATGGGTTTGATGAAGAGGATGAGCCTGCTTATTCTGAAGTTGAGCAAGATCATGATTGA 1155 44.33 MDDPSTNFFTNLFKFNSPTNFHHHPFPYSQNPPPNFFPTHLHAPPSSPPLRQALPLLRRSPTRSSQDHHHHHHHHPFLPSSSSSSAMEIDNNNNNNNNDGNTEKDRNDDGSVTVALHIGLPSPSASEMATLLMSSTTNHDNDDEEEDLEEELEDEDEDHQQQQVAISGFCLSSRLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNNNNTNNNNGDHNHHNHNHNHNHNHNHNHNHNHGFDEEDEPAYSEVEQDHD 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7947960 7950551 - Hsped.05g05650.1 Hepe05g0565 569830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0565 384 MobiDBLite consensus disorder prediction 330 384 - -
Hepe05g0565 384 Coils Coil 138 165 - -
Hepe05g0565 384 MobiDBLite consensus disorder prediction 362 384 - -
Hepe05g0565 384 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 278 302 - -
Hepe05g0565 384 FunFam Zinc finger protein WIP2 248 330 - -
Hepe05g0565 384 MobiDBLite consensus disorder prediction 140 156 - -
Hepe05g0565 384 Gene3D Classic Zinc Finger 194 217 - -
Hepe05g0565 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 279 299 IPR013087 -
Hepe05g0565 384 PANTHER ZINC FINGER PROTEIN WIP2 30 354 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Hepe05g0565 384 SUPERFAMILY beta-beta-alpha zinc fingers 261 299 IPR036236 -
Hepe05g0565 384 SMART c2h2final6 195 217 IPR013087 -
Hepe05g0565 384 SMART c2h2final6 279 299 IPR013087 -
Hepe05g0565 384 MobiDBLite consensus disorder prediction 136 156 - -
Hepe05g0565 384 MobiDBLite consensus disorder prediction 32 109 - -
Hepe05g0565 384 SUPERFAMILY beta-beta-alpha zinc fingers 191 217 IPR036236 -
Hepe05g0565 384 MobiDBLite consensus disorder prediction 78 100 - -
Hepe05g0565 384 MobiDBLite consensus disorder prediction 330 344 - -
Hepe05g0565 384 Gene3D Classic Zinc Finger 256 341 - -
Hepe05g0565 384 FunFam zinc finger protein WIP2-like 194 217 - -
Hepe05g0565 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 195 222 IPR013087 -
Hepe05g0565 384 ProSitePatterns Zinc finger C2H2 type domain signature. 197 217 IPR013087 -
Hepe05g0565 384 MobiDBLite consensus disorder prediction 32 51 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2725 Hepe-Chr2:75570150 Hepe05g0565 Hepe-Chr5:7947960 1.72e-106 dispersed
Hepe04g0308 Hepe-Chr4:48818921 Hepe05g0565 Hepe-Chr5:7947960 5.45e-133 dispersed
Hepe05g0565 Hepe-Chr5:7947960 Hepe08g0113 Hepe-Chr8:959454 4.87e-118 dispersed
Hepe03g1738 Hepe-Chr3:74252542 Hepe05g0565 Hepe-Chr5:7947960 1.31e-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55586 None None None None Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0565 - - - 0.0