Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0578 ATGACCCACTTTCTCGAACCCAAATTCCATCAAACCCCATTTCCCCTTCTCCGCCGCACCACAAAATCTCCACCGCCCATTTCAATCCGATGCGGCAGCTCCGCCCGCGAGCTCCGATCCCGATTAGACTCCATCAAGAACACCCAAAAGCTCACCGAAGCCATGAAGCTCGTCGCTGCCGCCAAAGTCCGCCGAGCCCAAGAAGCGGTAATCAACAGCCGCCCCTTCTCTCAATCCCTCGCCAAATTTCTCCATTTCATTACCCAACAAATCCAACCAGACGACATAGATTTCCCCTTTCTAAACCCTAGACCCATCAAAAAAGTCGCCGTCGTCGTCTTCACCGGCGACCGAGGCCTCTGTGGGGGTTTCAACGCGTCGGTGATCAAAAAAGCCGAGACCCGATTGGCCGAATTGAAAAATCTCGATCTGGGTCACACCCTAATCAGCGTCGGCAAAAAGGGCAACTCGCATTTCCGCCGCCGCTCCGATGTTCAAGTCGACCGGTTCATCACCGGCTGCGGTGGCAGTTCATTACCCACTGCAAAAGAAGCCCAAGCCATTGCAGACATTGTGTTTTCTCTGTTCATCAGCGAAGAAGTGGACAAAGTGGAACTAATTTACACAAAGTTCGTTTCTTTGCTGAAATCTGAGCCTGTGATTGAGACTCTGCTGCCATTGTTGGGGAAAGAGGAAGCAATGGGAGATGGGGGGTTTAGATTGACGACAAAGGAAGGGAAATTGAAGGTGGAGAGAGAGGGGAAAATGATGGGGAATTTGGGGGAAATTTCGCCATTGTTGGAGTTTGAACAAGACCCAGTTCAGATTTTGGATGGGATGATGGCTCTGTATTTGAACAGCCAGATTTTGAGGGCTTTGCAGGAATCTTTGGCGAGTGAGGTCGCGGCGAGGATGAATGCCATGAGTAATGCTTCTGAGAATGCAATGGAGTTGAAGAAATCTATTTCGATTGCTTATAATCGAGAGAGACAGGCTAAGATTACAGGGGAGATTTTGGAGATTGTTGCTGGATCTGAGGCTCTTGAGAGATTTTGA 1056 49.72 MTHFLEPKFHQTPFPLLRRTTKSPPPISIRCGSSARELRSRLDSIKNTQKLTEAMKLVAAAKVRRAQEAVINSRPFSQSLAKFLHFITQQIQPDDIDFPFLNPRPIKKVAVVVFTGDRGLCGGFNASVIKKAETRLAELKNLDLGHTLISVGKKGNSHFRRRSDVQVDRFITGCGGSSLPTAKEAQAIADIVFSLFISEEVDKVELIYTKFVSLLKSEPVIETLLPLLGKEEAMGDGGFRLTTKEGKLKVEREGKMMGNLGEISPLLEFEQDPVQILDGMMALYLNSQILRALQESLASEVAARMNAMSNASENAMELKKSISIAYNRERQAKITGEILEIVAGSEALERF 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8209307 8210362 + Hsped.05g05780.1 Hepe05g0578 569843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0578 351 Gene3D - 99 228 - -
Hepe05g0578 351 PANTHER ATP SYNTHASE GAMMA CHAIN 20 348 IPR000131 GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0045261(InterPro)|GO:0046933(InterPro)|GO:0046933(PANTHER)
Hepe05g0578 351 FunFam ATP synthase gamma chain 99 228 - -
Hepe05g0578 351 NCBIfam ATP synthase F1 subunit gamma 34 348 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Hepe05g0578 351 Hamap ATP synthase gamma chain [atpG]. 32 348 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Hepe05g0578 351 CDD F1-ATPase_gamma 34 345 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Hepe05g0578 351 FunFam ATP synthase gamma chain, chloroplastic 244 348 - -
Hepe05g0578 351 PRINTS ATP synthase gamma subunit signature 295 314 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Hepe05g0578 351 PRINTS ATP synthase gamma subunit signature 326 347 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Hepe05g0578 351 PRINTS ATP synthase gamma subunit signature 202 219 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Hepe05g0578 351 PRINTS ATP synthase gamma subunit signature 106 125 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Hepe05g0578 351 Gene3D ATP synthase, gamma subunit, helix hairpin domain 33 98 - -
Hepe05g0578 351 Gene3D ATP synthase, gamma subunit, helix hairpin domain 243 348 - -
Hepe05g0578 351 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 34 348 IPR035968 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Hepe05g0578 351 Pfam ATP synthase 34 348 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Hepe05g0578 351 FunFam ATP synthase gamma chain, chloroplastic 33 100 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0578 Hepe-Chr5:8209307 Hepe07g2036 Hepe-Chr7:64556874 3.24e-125 dispersed
Hepe05g0578 Hepe-Chr5:8209307 Hepe04g1768 Hepe-Chr4:72617337 7.24e-129 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0578 K02115 - csv:101214682 599.356