Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0710 ATGGCTATGGCTATGGCTGCCGATTCTCAGTTCCATGTTCTCGCCGTCGATGATAGCATCATAGATCGAAAACTCATCGAAAGACTTCTCAAAACCTCCTCCTATCAAGTTACTACTGTTGATTCTGGTAGCAAGGCCTTGGAATTTCTGGGTTTGATTCGAGAAGATGAACATATGAACTTCAATTCCCCTTCTTCTTATTTGAATCATCAGGAAGTAGAAGTTAATCTTATCATTACTGATTACTGTATGCCTGGGATGACTGGCTTCGATTTGCTCAAGAAACTTAAGGAATCGACGTCTCTAAGAAACATACCAGTGGTGATAATGTCATCTGAAAACGTACCTTCGAGAATCAACAGATGTTTGGAAGAAGGAGCGGAAGAGTTCTTCCTGAAGCCAGTACGATTGTGCGATGTGAATAAACTGAAACCGCACATGATGAAGAGGAAATTGAAGGATCAAAATCAAGAAGACGAGGAAGAAGAAGAAACGACGGAGGCCGAATTCGAATCGGTACAACAATTACAGGTGCAGATTAACGGTAAGAAGAGAAAGGCGGTCATGGAAGGAGTGGGAGCGGAGAGAAGAAGAAGAAACTACAACAACAATAGCAATGGCGTTGCGACTGTGATTTGA 639 42.25 MAMAMAADSQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLIREDEHMNFNSPSSYLNHQEVEVNLIITDYCMPGMTGFDLLKKLKESTSLRNIPVVIMSSENVPSRINRCLEEGAEEFFLKPVRLCDVNKLKPHMMKRKLKDQNQEDEEEEETTEAEFESVQQLQVQINGKKRKAVMEGVGAERRRRNYNNNSNGVATVI 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12677465 12679484 + Hsped.05g07100.1 Hepe05g0710 569975

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0710 212 MobiDBLite consensus disorder prediction 150 175 - -
Hepe05g0710 212 Pfam Response regulator receiver domain 13 137 IPR001789 GO:0000160(InterPro)
Hepe05g0710 212 SUPERFAMILY CheY-like 10 148 IPR011006 -
Hepe05g0710 212 SMART REC_2 11 143 IPR001789 GO:0000160(InterPro)
Hepe05g0710 212 Coils Coil 149 176 - -
Hepe05g0710 212 CDD REC_typeA_ARR 13 143 - -
Hepe05g0710 212 Gene3D - 12 208 - -
Hepe05g0710 212 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 177 IPR045279 GO:0009736(InterPro)
Hepe05g0710 212 MobiDBLite consensus disorder prediction 198 212 - -
Hepe05g0710 212 ProSiteProfiles Response regulatory domain profile. 12 148 IPR001789 GO:0000160(InterPro)
Hepe05g0710 212 MobiDBLite consensus disorder prediction 191 212 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0710 K14492 - - csv:101220810 284.263
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0710 Hepe-Chr5:12677465 Hepe09g0164 Hepe-Chr9:1312143 1.05e-49 dispersed
Hepe01g0637 Hepe-Chr1:68251939 Hepe05g0710 Hepe-Chr5:12677465 9.55e-52 transposed
Hepe01g0986 Hepe-Chr1:74485700 Hepe05g0710 Hepe-Chr5:12677465 1.04e-67 transposed
Hepe02g2525 Hepe-Chr2:71971938 Hepe05g0710 Hepe-Chr5:12677465 1.35e-67 transposed
Hepe04g0485 Hepe-Chr4:56344491 Hepe05g0710 Hepe-Chr5:12677465 5.61e-75 transposed
Hepe02g2242 Hepe-Chr2:63796930 Hepe05g0710 Hepe-Chr5:12677465 3.90e-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1179 . . . Bda03g00627 Bpe04g01386 . Bma04g01468 Bma10g00231 . . Cma03g00130 Cma07g01364 Car03g00131 Car07g01312 Sed14g0018 . . Bhi03g02471 Tan03g0466 Cmetu08g0497 . Hepe04g0485 . . Cla04g00444 Cam04g0440 Cec04g0555 Cco04g0576 Clacu04g0453 Cmu04g0488 Cre04g0540 Cone3ag0023 . Cone13ag0617 Cone19ag0548 Lsi01g01790 Csa04g01951 . Cme04g02093 . . . . Bpe04g00591 . . . Sed02g0819 Cmo03g00167 Cmo07g01403 . . . Car14g00475 Cpe03g00456 . Bhi11g02832 Tan08g1252 Cmetu04g1441 . Hepe05g0710 . . Cla10g01535 Cam10g1583 Cec10g1628 Cco10g1598 Clacu10g1595 Cmu10g2355 Cre10g1736 Lsi03g01597 Csa03g03727 . Cme08g01358
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g0595 . 59 385 Response Regulator Gene Family AT3G16857 52.3 2.8e-60 230.3
Hepe10g0068 . 52 256 Response Regulator Gene Family AT3G16857 52.4 4.3e-53 206.5
Hepe08g2484 . 17 338 Response Regulator Gene Family AT4G31920 57.1 1.5e-81 300.8
Hepe05g1404 . 16 271 Response Regulator Gene Family AT4G31920 53.7 5.0e-69 259.2
Hepe10g0068 . 11 259 Response Regulator Gene Family AT4G31920 51.6 1.8e-63 240.7
Hepe01g1979 . 93 257 Response Regulator Gene Family AT1G67710 54.7 6.1e-41 165.6
Hepe05g1404 . 99 262 Response Regulator Gene Family AT1G67710 55.3 5.2e-40 162.5
Hepe03g0069 . 1 161 Response Regulator Gene Family AT1G67710 52.7 6.3e-38 155.6
Hepe09g0595 . 16 390 Response Regulator Gene Family AT2G25180 53.3 7.8e-92 335.1
Hepe08g2484 . 17 348 Response Regulator Gene Family AT2G25180 56.5 6.2e-89 325.5
Hepe05g1404 . 8 291 Response Regulator Gene Family AT2G25180 54.7 3.2e-77 286.6
Hepe10g0068 . 11 256 Response Regulator Gene Family AT2G25180 55.6 2.7e-68 256.9
Hepe10g0068 . 72 259 Response Regulator Gene Family AT2G01760 50.5 4.5e-46 182.2
Hepe08g2484 . 79 278 Response Regulator Gene Family AT2G01760 50.7 2.4e-39 159.8
Hepe10g0068 . 9 258 Response Regulator Gene Family AT5G58080 50.6 1.2e-61 235.0
Hepe05g1404 . 18 242 Response Regulator Gene Family AT4G16110 67.8 9.9e-80 295.0
Hepe01g1979 . 11 235 Response Regulator Gene Family AT4G16110 59.1 1.6e-61 234.6
Hepe10g0068 . 10 235 Response Regulator Gene Family AT4G16110 54.4 9.6e-59 225.3
Hepe08g2484 . 18 264 Response Regulator Gene Family AT4G16110 54.8 1.9e-54 211.1
Hepe09g0595 . 17 249 Response Regulator Gene Family AT4G16110 64.1 3.2e-54 210.3
Hepe03g0069 . 1 141 Response Regulator Gene Family AT4G16110 56.4 1.8e-36 151.4
Hepe09g0164 . 15 175 Response Regulator Gene Family AT3G48100 69.3 7.6e-54 207.2
Hepe10g1680 . 30 189 Response Regulator Gene Family AT3G48100 54.9 7.3e-41 164.1
Hepe02g2525 . 213 353 Response Regulator Gene Family AT3G48100 60.3 9.6e-41 163.7
Hepe05g0710 . 4 149 Response Regulator Gene Family AT3G48100 56.2 1.6e-40 162.9
Hepe04g0485 . 9 158 Response Regulator Gene Family AT3G48100 56.0 2.1e-40 162.5
Hepe01g0986 . 2 180 Response Regulator Gene Family AT3G48100 51.4 2.4e-39 159.1
Hepe02g2242 . 19 163 Response Regulator Gene Family AT3G48100 56.2 5.8e-38 154.5
Hepe09g0164 . 28 169 Response Regulator Gene Family AT1G59940 65.8 4.4e-49 192.2
Hepe10g1680 . 24 206 Response Regulator Gene Family AT1G59940 56.5 2.9e-48 189.5
Hepe02g2525 . 172 350 Response Regulator Gene Family AT1G59940 55.5 8.1e-43 171.4
Hepe05g0710 . 10 149 Response Regulator Gene Family AT1G59940 59.3 1.7e-40 163.7
Hepe01g0637 . 18 149 Response Regulator Gene Family AT1G59940 62.1 4.1e-39 159.1
Hepe04g0485 . 11 156 Response Regulator Gene Family AT1G59940 54.8 3.5e-38 156.0
Hepe01g0986 . 12 152 Response Regulator Gene Family AT1G59940 60.3 4.6e-38 155.6
Hepe02g2242 . 19 161 Response Regulator Gene Family AT1G59940 54.9 1.7e-37 153.7
Hepe09g0164 . 30 169 Response Regulator Gene Family AT1G10470 69.9 2.6e-49 192.6
Hepe10g1680 . 24 222 Response Regulator Gene Family AT1G10470 55.4 1.7e-48 189.9
Hepe02g2525 . 207 350 Response Regulator Gene Family AT1G10470 59.0 1.7e-40 163.3
Hepe05g0710 . 12 149 Response Regulator Gene Family AT1G10470 60.1 2.2e-40 162.9
Hepe04g0485 . 17 156 Response Regulator Gene Family AT1G10470 59.3 4.1e-39 158.7
Hepe01g0637 . 20 149 Response Regulator Gene Family AT1G10470 61.5 1.0e-37 154.1
Hepe02g2242 . 19 161 Response Regulator Gene Family AT1G10470 55.6 2.3e-37 152.9
Hepe09g0164 . 15 175 Response Regulator Gene Family AT3G48100 69.3 7.6e-54 207.2
Hepe10g1680 . 30 189 Response Regulator Gene Family AT3G48100 54.9 7.3e-41 164.1
Hepe02g2525 . 213 353 Response Regulator Gene Family AT3G48100 60.3 9.6e-41 163.7
Hepe05g0710 . 4 149 Response Regulator Gene Family AT3G48100 56.2 1.6e-40 162.9
Hepe04g0485 . 9 158 Response Regulator Gene Family AT3G48100 56.0 2.1e-40 162.5
Hepe01g0986 . 2 180 Response Regulator Gene Family AT3G48100 51.4 2.4e-39 159.1
Hepe02g2242 . 19 163 Response Regulator Gene Family AT3G48100 56.2 5.8e-38 154.5
Hepe09g0164 . 26 178 Response Regulator Gene Family AT5G62920 73.2 5.9e-54 207.6
Hepe10g1680 . 26 206 Response Regulator Gene Family AT5G62920 53.8 2.3e-42 169.1
Hepe02g2525 . 213 349 Response Regulator Gene Family AT5G62920 60.6 3.7e-40 161.8
Hepe05g0710 . 12 149 Response Regulator Gene Family AT5G62920 58.7 3.7e-40 161.8
Hepe04g0485 . 12 158 Response Regulator Gene Family AT5G62920 55.8 8.2e-40 160.6
Hepe02g2242 . 19 159 Response Regulator Gene Family AT5G62920 57.0 2.9e-37 152.1
Hepe09g0164 . 30 162 Response Regulator Gene Family AT1G19050 77.4 6.1e-52 201.1
Hepe02g2525 . 191 352 Response Regulator Gene Family AT1G19050 52.5 5.3e-40 161.4
Hepe05g0710 . 10 151 Response Regulator Gene Family AT1G19050 55.6 7.7e-39 157.5
Hepe04g0485 . 11 158 Response Regulator Gene Family AT1G19050 54.1 1.7e-38 156.4
Hepe01g0986 . 12 157 Response Regulator Gene Family AT1G19050 56.2 3.8e-38 155.2
Hepe01g0637 . 20 150 Response Regulator Gene Family AT1G19050 58.8 7.2e-37 151.0
Hepe05g0710 . 3 153 Response Regulator Gene Family AT2G41310 74.8 1.4e-57 219.9
Hepe04g0485 . 8 272 Response Regulator Gene Family AT2G41310 50.9 1.2e-56 216.9
Hepe02g2525 . 203 351 Response Regulator Gene Family AT2G41310 66.4 2.1e-50 196.1
Hepe01g0986 . 6 183 Response Regulator Gene Family AT2G41310 50.2 4.4e-48 188.3
Hepe02g2242 . 11 160 Response Regulator Gene Family AT2G41310 59.2 1.0e-44 177.2
Hepe01g0637 . 12 150 Response Regulator Gene Family AT2G41310 56.9 2.6e-40 162.5
Hepe09g0164 . 30 160 Response Regulator Gene Family AT2G41310 61.9 4.5e-40 161.8
Hepe04g0485 . 8 272 Response Regulator Gene Family AT3G57040 52.1 1.4e-60 229.9
Hepe05g0710 . 3 155 Response Regulator Gene Family AT3G57040 75.8 1.4e-60 229.9
Hepe02g2525 . 210 351 Response Regulator Gene Family AT3G57040 68.1 6.4e-50 194.5
Hepe01g0986 . 7 156 Response Regulator Gene Family AT3G57040 68.4 1.1e-49 193.7
Hepe02g2242 . 15 160 Response Regulator Gene Family AT3G57040 61.9 9.6e-46 180.6
Hepe09g0164 . 23 160 Response Regulator Gene Family AT3G57040 58.1 3.2e-41 165.6
Hepe01g0637 . 18 150 Response Regulator Gene Family AT3G57040 57.1 1.0e-39 160.6
Hepe09g0164 . 16 178 Response Regulator Gene Family AT1G74890 69.3 1.7e-54 209.5
Hepe02g2525 . 211 344 Response Regulator Gene Family AT1G74890 61.2 7.0e-40 161.0
Hepe01g0986 . 8 157 Response Regulator Gene Family AT1G74890 58.0 1.2e-39 160.2
Hepe04g0485 . 12 151 Response Regulator Gene Family AT1G74890 58.6 4.5e-39 158.3
Hepe05g0710 . 10 149 Response Regulator Gene Family AT1G74890 58.6 7.7e-39 157.5
Hepe01g0637 . 20 146 Response Regulator Gene Family AT1G74890 60.6 2.5e-37 152.5
Hepe01g0637 . 20 151 Response Regulator Gene Family AT2G40670 68.4 1.4e-46 183.0
Hepe05g0710 . 8 149 Response Regulator Gene Family AT2G40670 57.3 1.5e-40 162.9
Hepe09g0164 . 23 160 Response Regulator Gene Family AT2G40670 59.9 6.2e-39 157.5
Hepe04g0485 . 13 158 Response Regulator Gene Family AT2G40670 51.7 7.5e-37 150.6
Hepe01g0637 . 3 151 Response Regulator Gene Family AT3G56380 66.0 6.8e-48 187.2
Hepe09g0164 . 17 160 Response Regulator Gene Family AT3G56380 59.6 1.4e-40 162.9
Hepe05g0710 . 8 149 Response Regulator Gene Family AT3G56380 54.5 1.3e-38 156.4
Hepe04g0485 . 2 158 Response Regulator Gene Family AT3G56380 53.2 2.2e-38 155.6
Hepe02g2242 . 11 157 Response Regulator Gene Family AT3G56380 52.3 4.1e-37 151.4
Hepe01g0986 . 6 147 Response Regulator Gene Family AT3G56380 54.5 9.2e-37 150.2
Hepe02g2525 . 211 352 Response Regulator Gene Family AT3G56380 54.5 9.2e-37 150.2
Hepe09g0595 . 59 385 Response Regulator Gene Family AT3G16857 52.3 2.8e-60 230.3
Hepe10g0068 . 52 256 Response Regulator Gene Family AT3G16857 52.4 4.3e-53 206.5
Hepe05g1404 . 18 242 Response Regulator Gene Family AT4G16110 67.8 9.9e-80 295.0
Hepe01g1979 . 11 235 Response Regulator Gene Family AT4G16110 59.1 1.6e-61 234.6
Hepe10g0068 . 10 235 Response Regulator Gene Family AT4G16110 54.4 9.6e-59 225.3
Hepe08g2484 . 18 264 Response Regulator Gene Family AT4G16110 54.8 1.9e-54 211.1
Hepe09g0595 . 17 249 Response Regulator Gene Family AT4G16110 64.1 3.2e-54 210.3
Hepe03g0069 . 1 141 Response Regulator Gene Family AT4G16110 56.4 1.8e-36 151.4
Hepe08g2484 . 17 338 Response Regulator Gene Family AT4G31920 57.1 1.5e-81 300.8
Hepe05g1404 . 16 271 Response Regulator Gene Family AT4G31920 53.7 5.0e-69 259.2
Hepe10g0068 . 11 259 Response Regulator Gene Family AT4G31920 51.6 1.8e-63 240.7
Hepe01g1979 . 93 257 Response Regulator Gene Family AT1G67710 54.7 6.1e-41 165.6
Hepe05g1404 . 99 262 Response Regulator Gene Family AT1G67710 55.3 5.2e-40 162.5
Hepe03g0069 . 1 161 Response Regulator Gene Family AT1G67710 52.7 6.3e-38 155.6
Hepe09g0595 . 16 390 Response Regulator Gene Family AT2G25180 53.3 7.8e-92 335.1
Hepe08g2484 . 17 348 Response Regulator Gene Family AT2G25180 56.5 6.2e-89 325.5
Hepe05g1404 . 8 291 Response Regulator Gene Family AT2G25180 54.7 3.2e-77 286.6
Hepe10g0068 . 11 256 Response Regulator Gene Family AT2G25180 55.6 2.7e-68 256.9
Hepe10g0068 . 72 259 Response Regulator Gene Family AT2G01760 50.5 4.5e-46 182.2
Hepe08g2484 . 79 278 Response Regulator Gene Family AT2G01760 50.7 2.4e-39 159.8
Hepe10g0068 . 9 258 Response Regulator Gene Family AT5G58080 50.6 1.2e-61 235.0
Hepe09g0102 . 23 210 Response Regulator Gene Family AT5G61380 76.7 9.6e-77 285.0
Hepe07g2494 . 24 129 Response Regulator Gene Family AT5G61380 73.6 2.2e-36 151.0
Hepe04g0907 . 69 206 Response Regulator Gene Family AT5G60100 76.8 2.9e-53 206.5
Hepe06g0835 . 45 182 Response Regulator Gene Family AT5G60100 60.9 1.9e-44 177.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000219 2 6 2 4 4 5 9 5 5 3 5 5 8 5 5 8 5 6 7 5 5 5 6 6 6 5 4 13 7 2 163
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55601 PF00072 Response_reg 1.00E-18 CL0304 Hepe TR