Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe05g0787 | ATGCACGGTTACATTCTCCTTCACATGGCCGACGCTCAGGAGTTATTGCCTCGTCGGAAACCTGTTGGGAAGCGTGCCTCCGCCGCCAACAGAGACCCCGACACCGCCACCGCCACCGCCACCGTCCCGGCTCCCTGTGGCGCTTGCAAGTTTCTCAGAAGAAAATGTGTCACTGGCTGCATCTTTGCACCACATTTCGCCTCCGATCAAGGCGCTGCTCGCTTTGCTGCCGTGCATAAGGTCTTTGGAGCGAGCAACGTCTCGAAGCTGCTGCTGCATATTCCGGTCAGCCGCCGAAACGATGCCGTCGTCACCATTTCCTATGAGGCTCAGGCTAGACTCTCCGACCCTGTCTATGGCTGTGTCTCTACTGTACTTGCCCTACAACAACAGGTGGCATCTCTGCAGGCGGAGCTTTCCGCGATTCAAACTCAATTGATAAGCAGCAGGTTGGCATTTGCAACTGCAATTCAAAACTCACAGCCACCTCATCAAGTCGGAGTCCTGCAGCCAGCTTACTCGAACAACTCCTCCATCTCCGTCTCCACCTCCGTTCATAATGCGATAAATTTGAGTAGTTTTGCTTCCAATTACGACCTTCCGACAGAGACCACCCCATCTCCCCATCACTTAGAACCTCTTCACCTCCCCCATGGACCGATCGAAGAGGAGGAAGACGAGGAAAATAGCCAGTTGCCTACCATCTTTGTTGACGAGTTACTCCGCCGAAGGTGA | 735 | 54.15 | MHGYILLHMADAQELLPRRKPVGKRASAANRDPDTATATATVPAPCGACKFLRRKCVTGCIFAPHFASDQGAARFAAVHKVFGASNVSKLLLHIPVSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELSAIQTQLISSRLAFATAIQNSQPPHQVGVLQPAYSNNSSISVSTSVHNAINLSSFASNYDLPTETTPSPHHLEPLHLPHGPIEEEEDEENSQLPTIFVDELLRRR | 244 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 18624782 | 18632176 | + | Hsped.05g07870.1 | Hepe05g0787 | 570052 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe05g0787 | 244 | ProSiteProfiles | LOB domain profile. | 44 | 146 | IPR004883 | - | |
Hepe05g0787 | 244 | Pfam | Lateral organ boundaries (LOB) domain | 45 | 143 | IPR004883 | - | |
Hepe05g0787 | 244 | MobiDBLite | consensus disorder prediction | 20 | 39 | - | - | |
Hepe05g0787 | 244 | Coils | Coil | 125 | 145 | - | - | |
Hepe05g0787 | 244 | MobiDBLite | consensus disorder prediction | 201 | 234 | - | - | |
Hepe05g0787 | 244 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 43 | 190 | - | GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe05g0787 | Hepe-Chr5:18624782 | Hepe06g1935 | Hepe-Chr6:70569932 | 1.35e-45 | dispersed | |
Hepe10g0823 | Hepe-Chr10:16976909 | Hepe05g0787 | Hepe-Chr5:18624782 | 1.47e-29 | wgd | |
Hepe05g0787 | Hepe-Chr5:18624782 | Hepe08g2048 | Hepe-Chr8:57459279 | 1.10e-29 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55605 | PF03195 | LOB | 2.40E-37 | No_clan | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe05g0787 | - | - | - | 0.0 |