Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0787 ATGCACGGTTACATTCTCCTTCACATGGCCGACGCTCAGGAGTTATTGCCTCGTCGGAAACCTGTTGGGAAGCGTGCCTCCGCCGCCAACAGAGACCCCGACACCGCCACCGCCACCGCCACCGTCCCGGCTCCCTGTGGCGCTTGCAAGTTTCTCAGAAGAAAATGTGTCACTGGCTGCATCTTTGCACCACATTTCGCCTCCGATCAAGGCGCTGCTCGCTTTGCTGCCGTGCATAAGGTCTTTGGAGCGAGCAACGTCTCGAAGCTGCTGCTGCATATTCCGGTCAGCCGCCGAAACGATGCCGTCGTCACCATTTCCTATGAGGCTCAGGCTAGACTCTCCGACCCTGTCTATGGCTGTGTCTCTACTGTACTTGCCCTACAACAACAGGTGGCATCTCTGCAGGCGGAGCTTTCCGCGATTCAAACTCAATTGATAAGCAGCAGGTTGGCATTTGCAACTGCAATTCAAAACTCACAGCCACCTCATCAAGTCGGAGTCCTGCAGCCAGCTTACTCGAACAACTCCTCCATCTCCGTCTCCACCTCCGTTCATAATGCGATAAATTTGAGTAGTTTTGCTTCCAATTACGACCTTCCGACAGAGACCACCCCATCTCCCCATCACTTAGAACCTCTTCACCTCCCCCATGGACCGATCGAAGAGGAGGAAGACGAGGAAAATAGCCAGTTGCCTACCATCTTTGTTGACGAGTTACTCCGCCGAAGGTGA 735 54.15 MHGYILLHMADAQELLPRRKPVGKRASAANRDPDTATATATVPAPCGACKFLRRKCVTGCIFAPHFASDQGAARFAAVHKVFGASNVSKLLLHIPVSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELSAIQTQLISSRLAFATAIQNSQPPHQVGVLQPAYSNNSSISVSTSVHNAINLSSFASNYDLPTETTPSPHHLEPLHLPHGPIEEEEDEENSQLPTIFVDELLRRR 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18624782 18632176 + Hsped.05g07870.1 Hepe05g0787 570052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0787 244 ProSiteProfiles LOB domain profile. 44 146 IPR004883 -
Hepe05g0787 244 Pfam Lateral organ boundaries (LOB) domain 45 143 IPR004883 -
Hepe05g0787 244 MobiDBLite consensus disorder prediction 20 39 - -
Hepe05g0787 244 Coils Coil 125 145 - -
Hepe05g0787 244 MobiDBLite consensus disorder prediction 201 234 - -
Hepe05g0787 244 PANTHER LOB DOMAIN CONTAINING PROTEIN 43 190 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0787 Hepe-Chr5:18624782 Hepe06g1935 Hepe-Chr6:70569932 1.35e-45 dispersed
Hepe10g0823 Hepe-Chr10:16976909 Hepe05g0787 Hepe-Chr5:18624782 1.47e-29 wgd
Hepe05g0787 Hepe-Chr5:18624782 Hepe08g2048 Hepe-Chr8:57459279 1.10e-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55605 PF03195 LOB 2.40E-37 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0787 - - - 0.0