Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0800 ATGGCTTCTTCCTCCTCTGATCCTCCCTTCAAACACGAAGCCGCTGCCACTGGAGGAGGAACGGCGGAATCTTCCGACGTTGTAATGGCGAACGATCAGCTTTTACTCTACAGAGGATTAAAGAAAGCCAAGAAAGAGAGAGGTTGCACTGCTAAAGAGCGCATCAGTAAAATGCCTCCATGTGCTGCTGGAAAACGAAGCTCTATATACCGCGGAGTCACTAGGCATAGATGGACTGGTCGTTATGAAGCTCATCTTTGGGATAAAAGTACTTGGAACCAGAACCAAAACAAGAAGGGGAAGCAAGGAGCATATGATGAAGAAGAGGCAGCTGCTAGGGCATATGATTTGGCTGCCTTAAAATATTGGGGTCCTGGGACTCTTATTAATTTTCCAGTGACTGATTATACAAGGGACCTTGAGGAAATGCAGAATGTTTCAAGAGAGGAATATCTTGCATCTCTAAGGAGAAAGAGCAGTGGATTCTCCAGGGGAATATCTAAATATCGTGGTCTCTCAAGTCGATGGGAGCCTTCATTGGGTCGTATGCCGGGCCCTGATTACGTCAACAGCATAAATTACGGTGCTGGAGATGATCAAGCAACAGAAAGCGAATTTGTCCACAGCTTCTGCATTGAAAGGAAGATTGATTTAACAAGTCACATTAAGTGGTGGGGGCCTAACAAAACTCGAACAGCCAGTGCTGGCTCAAAGTCATCAGAAGAAGACAAACATAGTTGTGCTGGAGAAGTTGGCAGTGAGCTCAAAGCTCTTGGACAGACCACCCGTCCTACGGAGCCATATGAGATGCCCTGTTTGGGTACATTACATGGGGTAAAGAAGGCTGCTTCCAAGGTCTCTGCTTTAAGCATTTTGTCACGGTCAGCAGCCTACAAGAGTTTGCAGGAGAAAGCTTTGAAATTACAGGAAATTAACAATGAGAATGATGAGAACGAAAATAAAAACACTGTTAACAAGATAGATCATGGGAAAGCAGTCGAAACACATACAAGTCATGGTGGTGATCCCAGCGAGAGATATGGGGTTGCTTTCGGAACAAGTGGTGGATTGCCAGTTCAGAGAAATATGTTCCCTTTGACTCCATTCTTAACCGCACCTCTTCTTAGCAGTTACAACACTGTTGATCCCTTGGGAGATCCGATTCATTGGACATCTCTTGTATCTGTTCTTCCTACCGAACTTTCTCGTACAGCTGAGTTAACGAAAACTGAAACTTCTTCAACTTACACTTTGTTTCGGCCTGAGGATTAA 1272 44.81 MASSSSDPPFKHEAAATGGGTAESSDVVMANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGISKYRGLSSRWEPSLGRMPGPDYVNSINYGAGDDQATESEFVHSFCIERKIDLTSHIKWWGPNKTRTASAGSKSSEEDKHSCAGEVGSELKALGQTTRPTEPYEMPCLGTLHGVKKAASKVSALSILSRSAAYKSLQEKALKLQEINNENDENENKNTVNKIDHGKAVETHTSHGGDPSERYGVAFGTSGGLPVQRNMFPLTPFLTAPLLSSYNTVDPLGDPIHWTSLVSVLPTELSRTAELTKTETSSTYTLFRPED 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19156197 19160865 + Hsped.05g08000.1 Hepe05g0800 570065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0800 423 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 49 245 - -
Hepe05g0800 423 Pfam AP2 domain 70 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g0800 423 SUPERFAMILY DNA-binding domain 68 133 IPR016177 GO:0003677(InterPro)
Hepe05g0800 423 Coils Coil 298 326 - -
Hepe05g0800 423 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g0800 423 PRINTS Ethylene responsive element binding protein signature 114 134 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g0800 423 MobiDBLite consensus disorder prediction 1 24 - -
Hepe05g0800 423 Gene3D AP2/ERF domain 69 134 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g0800 423 MobiDBLite consensus disorder prediction 312 346 - -
Hepe05g0800 423 MobiDBLite consensus disorder prediction 230 249 - -
Hepe05g0800 423 ProSiteProfiles AP2/ERF domain profile. 69 132 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g0800 423 MobiDBLite consensus disorder prediction 312 341 - -
Hepe05g0800 423 FunFam AP2-like ethylene-responsive transcription factor 68 134 - -
Hepe05g0800 423 SMART rav1_2 69 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0800 Hepe-Chr5:19156197 Hepe09g0546 Hepe-Chr9:5155113 1.57e-61 dispersed
Hepe02g1946 Hepe-Chr2:33659694 Hepe05g0800 Hepe-Chr5:19156197 9.59e-54 wgd
Hepe05g0800 Hepe-Chr5:19156197 Hepe08g1924 Hepe-Chr8:51016520 9.38e-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55607 PF00847 AP2 6.70E-10 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0800 K09285 - csv:101206434 756.518