Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe05g0856 | ATGATGCAGCCGGATCAAAGTTCTGAGCTTTACAGATTCTTGGCCCAGAACGGAGCCTTCAACCTCGGCGGCGGTGCCGGCTCCTGCGGCTTTCCGGCAGCCCAAAGCTTGTCGAGCTCATCCTCAGCTTACTACCCTTTGGATCAGACGGCAGCGGCCACCACTGAGCCACCACTGCCGTCGCCCCACGACAGAGCCCTCGCCGCCCTCAAGAATCACAAGGAAGCTGAGAAGCGGAGGAGAGAGAGAATCAACTCTCATCTTGATAAGCTTCGGACTCTTCTTCCTTGTAATTCTAAGACGGACAAGGCATCACTTCTGGCAAAAGTGGTTCAGCGAGTGAAAGAGCTGAAGCATGAGACCTCCGACATTTCGGAGCTCGAAACCTTCCCCTCAGAGACCGACGAGATCACGGTCCTCTCCGGCGAGCAATCCGACGACGGACGACTCCTCTTCAAGGCATCTCTGTGCTGCGAGGACCGCTCGGACCTGATTCCGGAGCTGAACGACATCCTGAATTCGCTGCAGCTGAAGACCCTGAGGGCTGACATCGTCACCGTCGGCGGCAGAATCCGCAATGTTCTTCTTATCGCGGCCAACGACCACCACAGCGTCGAGTCCGTCCATTTTCTACACAACGCATTGAAATCCCTTCTTGAACGATCCAATTCTACCGATAGATCCAAGAGGAGGCGTCTTCTACTTCACCACAAATGA | 717 | 55.23 | MMQPDQSSELYRFLAQNGAFNLGGGAGSCGFPAAQSLSSSSSAYYPLDQTAAATTEPPLPSPHDRALAALKNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVQRVKELKHETSDISELETFPSETDEITVLSGEQSDDGRLLFKASLCCEDRSDLIPELNDILNSLQLKTLRADIVTVGGRIRNVLLIAANDHHSVESVHFLHNALKSLLERSNSTDRSKRRRLLLHHK | 238 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 24791374 | 24794437 | + | Hsped.05g08560.1 | Hepe05g0856 | 570121 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe05g0856 | 238 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 50 | 235 | IPR045847 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Hepe05g0856 | 238 | Gene3D | - | 64 | 128 | IPR036638 | GO:0046983(InterPro) | |
| Hepe05g0856 | 238 | Pfam | Helix-loop-helix DNA-binding domain | 72 | 118 | IPR011598 | GO:0046983(InterPro) | |
| Hepe05g0856 | 238 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 72 | 129 | IPR036638 | GO:0046983(InterPro) | |
| Hepe05g0856 | 238 | CDD | bHLH_AtAIG1_like | 64 | 139 | - | - | |
| Hepe05g0856 | 238 | SMART | finulus | 74 | 123 | IPR011598 | GO:0046983(InterPro) | |
| Hepe05g0856 | 238 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 68 | 117 | IPR011598 | GO:0046983(InterPro) | |
| Hepe05g0856 | 238 | FunFam | transcription factor bHLH30 | 63 | 126 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe01g1224 | Hepe-Chr1:77463147 | Hepe05g0856 | Hepe-Chr5:24791374 | 1.47e-43 | dispersed | |
| Hepe02g3308 | Hepe-Chr2:82684783 | Hepe05g0856 | Hepe-Chr5:24791374 | 5.67e-31 | dispersed | |
| Hepe05g0856 | Hepe-Chr5:24791374 | Hepe07g1874 | Hepe-Chr7:62254359 | 1.13e-35 | dispersed | |
| Hepe05g0856 | Hepe-Chr5:24791374 | Hepe02g2732 | Hepe-Chr2:75742883 | 9.78e-45 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 55610 | PF00010 | HLH | 1.10E-11 | No_clan | Hepe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe05g0856 | - | - | - | 0.0 |