Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g0856 ATGATGCAGCCGGATCAAAGTTCTGAGCTTTACAGATTCTTGGCCCAGAACGGAGCCTTCAACCTCGGCGGCGGTGCCGGCTCCTGCGGCTTTCCGGCAGCCCAAAGCTTGTCGAGCTCATCCTCAGCTTACTACCCTTTGGATCAGACGGCAGCGGCCACCACTGAGCCACCACTGCCGTCGCCCCACGACAGAGCCCTCGCCGCCCTCAAGAATCACAAGGAAGCTGAGAAGCGGAGGAGAGAGAGAATCAACTCTCATCTTGATAAGCTTCGGACTCTTCTTCCTTGTAATTCTAAGACGGACAAGGCATCACTTCTGGCAAAAGTGGTTCAGCGAGTGAAAGAGCTGAAGCATGAGACCTCCGACATTTCGGAGCTCGAAACCTTCCCCTCAGAGACCGACGAGATCACGGTCCTCTCCGGCGAGCAATCCGACGACGGACGACTCCTCTTCAAGGCATCTCTGTGCTGCGAGGACCGCTCGGACCTGATTCCGGAGCTGAACGACATCCTGAATTCGCTGCAGCTGAAGACCCTGAGGGCTGACATCGTCACCGTCGGCGGCAGAATCCGCAATGTTCTTCTTATCGCGGCCAACGACCACCACAGCGTCGAGTCCGTCCATTTTCTACACAACGCATTGAAATCCCTTCTTGAACGATCCAATTCTACCGATAGATCCAAGAGGAGGCGTCTTCTACTTCACCACAAATGA 717 55.23 MMQPDQSSELYRFLAQNGAFNLGGGAGSCGFPAAQSLSSSSSAYYPLDQTAAATTEPPLPSPHDRALAALKNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVQRVKELKHETSDISELETFPSETDEITVLSGEQSDDGRLLFKASLCCEDRSDLIPELNDILNSLQLKTLRADIVTVGGRIRNVLLIAANDHHSVESVHFLHNALKSLLERSNSTDRSKRRRLLLHHK 238
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 24791374 24794437 + Hsped.05g08560.1 Hepe05g0856 570121
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g0856 238 PANTHER TRANSCRIPTION FACTOR BHLH30 50 235 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe05g0856 238 Gene3D - 64 128 IPR036638 GO:0046983(InterPro)
Hepe05g0856 238 Pfam Helix-loop-helix DNA-binding domain 72 118 IPR011598 GO:0046983(InterPro)
Hepe05g0856 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 129 IPR036638 GO:0046983(InterPro)
Hepe05g0856 238 CDD bHLH_AtAIG1_like 64 139 - -
Hepe05g0856 238 SMART finulus 74 123 IPR011598 GO:0046983(InterPro)
Hepe05g0856 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 117 IPR011598 GO:0046983(InterPro)
Hepe05g0856 238 FunFam transcription factor bHLH30 63 126 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1224 Hepe-Chr1:77463147 Hepe05g0856 Hepe-Chr5:24791374 1.47e-43 dispersed
Hepe02g3308 Hepe-Chr2:82684783 Hepe05g0856 Hepe-Chr5:24791374 5.67e-31 dispersed
Hepe05g0856 Hepe-Chr5:24791374 Hepe07g1874 Hepe-Chr7:62254359 1.13e-35 dispersed
Hepe05g0856 Hepe-Chr5:24791374 Hepe02g2732 Hepe-Chr2:75742883 9.78e-45 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55610 PF00010 HLH 1.10E-11 No_clan Hepe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g0856 - - - 0.0