Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1139 ATGATTGCGAGCTCTCTTTGCAATGCTTCCGCTAAATTCTCGGCAGAAGTGATGGAGGTAGAAACGATGATGGAACAGAAAAGGAACCTATGCTCTGTTGATGAGAGCAGTCTCACTTCTCTTACGTCCAAGCGACACAAGACTGATTTTTCTATCTCCTCTAAGGAGAGGAAAGACAAACTGGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATACGGAAAGACAGATACGGCATCTGTTCTTCTGGAGGCAATGGAATATATCCAATTCCTTCACGAGCAAGTCAAGGTGTTGAGTGCTCCATATCTCCAAAGCACACCCACTGTTCAGTTGCAGGAGCTGGAGCCATACAACCACAGCCTGAGGAACAGAGGTTTATGTCTTGTTCCAATCTCGTGTACCGCTGGAGTTGCACGCAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAATTTCTCCCAAATTTGAGAAGGCCATCATCTCACCATTCAATTGA 507 45.96 MIASSLCNASAKFSAEVMEVETMMEQKRNLCSVDESSLTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVQLQELEPYNHSLRNRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKAIISPFN 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 56379059 56383360 + Hsped.05g11390.1 Hepe05g1139 570404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1139 168 FunFam Transcription factor bHLH113 family 44 120 - -
Hepe05g1139 168 Gene3D - 42 127 IPR036638 GO:0046983(InterPro)
Hepe05g1139 168 SMART finulus 53 100 IPR011598 GO:0046983(InterPro)
Hepe05g1139 168 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 94 IPR011598 GO:0046983(InterPro)
Hepe05g1139 168 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 44 138 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Hepe05g1139 168 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 110 IPR036638 GO:0046983(InterPro)
Hepe05g1139 168 CDD bHLH_AtbHLH_like 51 102 IPR045239 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1139 Hepe-Chr5:56379059 Hepe07g1128 Hepe-Chr7:21387435 1.91e-29 dispersed
Hepe01g0022 Hepe-Chr1:3611006 Hepe05g1139 Hepe-Chr5:56379059 1.26e-26 wgd
Hepe03g1099 Hepe-Chr3:62008252 Hepe05g1139 Hepe-Chr5:56379059 2.35e-62 wgd
Hepe05g1139 Hepe-Chr5:56379059 Hepe09g1511 Hepe-Chr9:38643167 1.95e-07 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1139 - - - 0.0