Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1179 ATGGCTTCTCACTCCCCCAACCTCGAGTGTCGGATGTACGAATCCAGGTACCCCGAGGTCGACATGGCCGTCATGATCCAGGTCAAGAACATCGCAGACATGGGCGCCTATGTCTCTCTTCTCGAGTACAACAACATTGAAGGCATGATACTATTTTCCGAGCTCTCTCGCCGTCGTATTCGGAGTGTCAGCAGCTTAATTAAGGTCGGCCGAATCGAGCCCGTCATGGTCCTCAGGGTCGATAAGGAGAAGGGCTATATTGATTTGAGTAAGAGGAGGGTTTCTGAGGAGGATATTCAGACTTGTGAGGAGAGGTATAACAAGAGCAAGCTTGTTCACTCTATTATGCGCCATGTTGCTGAGACTATGAACATTGATTTGGAGGACTTGTATATCCATGTTGGGTGGCCTTTGTACCGGAAATATGGTCACGCTTTTGAGGTAACCAAGGTAGTTCCCGCAATGTCTGAGGATGTAAAAGATTCTTTAATAAAGAATATTAAAAGAAGAATGACTCCCCAGCCAATGAAGGTTCGGGCTGATATTGAGATGAAGTGTTCCCAGTTTGACGGTGTTCTTCACATCAAGGAAGCAATGCGGAAAGCTGAAGCTGCTGGAAATGATGATTGTCCTGTTAAAATTAAGTTGGTTGCTCCTCCACTCTATGTCCTTACTACCCAGACACTTGACAAGGAGCAAGGAATCAGTGTTCTTGAAAAAGCAATCACTGCTTGCACCGAAGCAATTGAGCATCACAAAGGAAAGCTTGTAGTGAAGGAGGCACCTAGGGCGGTGAGTGAAAGAGACGACAAATTACTTGCCGAGCACATGGCGAAGCTACGACAAGACAATGAAGAAATTAGCGGAGATGAGGGTAGCGAGGAAGAGGAGGACACGGGAATGGGAGACGTCGATGTCGAGAATCTATAG 930 46.77 MASHSPNLECRMYESRYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQTCEERYNKSKLVHSIMRHVAETMNIDLEDLYIHVGWPLYRKYGHAFEVTKVVPAMSEDVKDSLIKNIKRRMTPQPMKVRADIEMKCSQFDGVLHIKEAMRKAEAAGNDDCPVKIKLVAPPLYVLTTQTLDKEQGISVLEKAITACTEAIEHHKGKLVVKEAPRAVSERDDKLLAEHMAKLRQDNEEISGDEGSEEEEDTGMGDVDVENL 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 57487582 57491748 - Hsped.05g11790.1 Hepe05g1179 570444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1179 309 ProSiteProfiles S1 domain profile. 21 92 IPR003029 GO:0003676(InterPro)
Hepe05g1179 309 SMART S1_6 19 92 IPR003029 GO:0003676(InterPro)
Hepe05g1179 309 Pfam S1 RNA binding domain 18 92 IPR003029 GO:0003676(InterPro)
Hepe05g1179 309 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 6 304 IPR011488 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005850(PANTHER)|GO:0006413(PANTHER)|GO:0033290(PANTHER)|GO:0043022(PANTHER)
Hepe05g1179 309 FunFam Eukaryotic translation initiation factor 2 subunit alpha 7 94 - -
Hepe05g1179 309 MobiDBLite consensus disorder prediction 279 309 - -
Hepe05g1179 309 MobiDBLite consensus disorder prediction 288 309 - -
Hepe05g1179 309 Gene3D EIF_2_alpha 176 298 IPR024055 -
Hepe05g1179 309 Gene3D - 6 94 IPR012340 -
Hepe05g1179 309 Pfam Eukaryotic translation initiation factor 2 alpha subunit 130 231 IPR011488 GO:0003723(InterPro)|GO:0003743(InterPro)
Hepe05g1179 309 Gene3D Translation initiation factor 2; subunit 1; domain 2 95 170 IPR024054 -
Hepe05g1179 309 SUPERFAMILY eIF2alpha middle domain-like 94 170 IPR024054 -
Hepe05g1179 309 SUPERFAMILY eIF-2-alpha, C-terminal domain 174 290 IPR024055 -
Hepe05g1179 309 SUPERFAMILY Nucleic acid-binding proteins 13 92 IPR012340 -
Hepe05g1179 309 CDD S1_IF2_alpha 18 93 IPR044126 GO:0003723(InterPro)
Hepe05g1179 309 FunFam Eukaryotic translation initiation factor 2 subunit alpha 95 148 - -
Hepe05g1179 309 FunFam Eukaryotic translation initiation factor 2 subunit 1 176 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0681 Hepe-Chr1:69107113 Hepe05g1179 Hepe-Chr5:57487582 6.09e-211 dispersed
Hepe01g0690 Hepe-Chr1:69263991 Hepe05g1179 Hepe-Chr5:57487582 2.03e-206 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1179 K03237 - csv:101209681 545.043