Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1187 ATGATGGAAAATTTCCCAAATTTTCTCTCAACTTCATCATCTTCAACCTCCCTCTCTCTGCAACAAATGCTTATTTCTCGAGCTTCCGAGCTTGCCGGAAGCCATGGAGGAGGCAGTTTTGGCCGGCAGCCGCCTGTCTCAGGTGGGTTTCCATTGTTTCACAGCGTTTCAGCGGACAACATGTCGTTCGATGCAACGAGTAGTATGAAGGACGACATCGTTTCGCTTAGTAAAAGCTTCCATGTTGATGGGACAGAAGGGAGTGGAGTGGATGGATTGGAGAAGAAGAAGGCCACCGGGGCCGGGGCCGGGGCCGGGGCGGGGGCGGGAGCGACGGCGGTGGCAATGACGACAGGACGGGGAGATTATGATAAGAAAAAGAAGACGAAAAGCCGGAGATTTGCTTTTCAAACAAGGAGTCAAGTTGATATTCTTGATGATGGTTATAGATGGAGAAAATATGGACAGAAGGCTGTGAAGAACAACAAATTCCCAAGAAGCTACTATAGATGTACACACCAAGGTTGCAAAGTGAAGAAGCAAGTGCAAAGACTAACTAGAGATGAAGGTGTGGTAGTGACAACTTATGAAGGAATTCACTCTCATGCCATTGAGAAATCCACTGACAACTTTGAGCATATTTTGAGTCAGATGCAAATTTACACTTCTTATTAA 675 46.52 MMENFPNFLSTSSSSTSLSLQQMLISRASELAGSHGGGSFGRQPPVSGGFPLFHSVSADNMSFDATSSMKDDIVSLSKSFHVDGTEGSGVDGLEKKKATGAGAGAGAGAGATAVAMTTGRGDYDKKKKTKSRRFAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCKVKKQVQRLTRDEGVVVTTYEGIHSHAIEKSTDNFEHILSQMQIYTSY 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 57725446 57728711 + Hsped.05g11870.1 Hepe05g1187 570452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1187 224 Gene3D WRKY domain 129 204 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe05g1187 224 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 113 207 IPR044810 GO:0003700(InterPro)
Hepe05g1187 224 Pfam WRKY DNA -binding domain 146 202 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe05g1187 224 ProSiteProfiles WRKY domain profile. 140 205 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe05g1187 224 SMART WRKY_cls 145 204 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe05g1187 224 FunFam WRKY transcription factor 57 131 205 - -
Hepe05g1187 224 SUPERFAMILY WRKY DNA-binding domain 137 203 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1187 Hepe-Chr5:57725446 Hepe07g0768 Hepe-Chr7:9285090 1.96e-34 dispersed
Hepe02g3408 Hepe-Chr2:83519531 Hepe05g1187 Hepe-Chr5:57725446 2.43e-53 transposed
Hepe05g1979 Hepe-Chr5:70260427 Hepe05g1187 Hepe-Chr5:57725446 3.97e-35 transposed
Hepe10g0789 Hepe-Chr10:15256032 Hepe05g1187 Hepe-Chr5:57725446 1.56e-24 wgd
Hepe10g0780 Hepe-Chr10:14879773 Hepe05g1187 Hepe-Chr5:57725446 1.93e-27 wgd
Hepe02g1696 Hepe-Chr2:23064225 Hepe05g1187 Hepe-Chr5:57725446 2.15e-54 wgd
Hepe05g1187 Hepe-Chr5:57725446 HepeContig66g0148 Hepe-ChrContig66:11912492 1.00e-11 wgd
Hepe05g1187 Hepe-Chr5:57725446 HepeContig66g0148 Hepe-ChrContig66:11912492 1.00e-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55625 PF03106 WRKY 2.40E-25 CL0274 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1187 - - - 0.0