Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1227 ATGGCCATGATTCTCATTTGTCCTATTAGAACTCCGGCGCTTTCGATTACATTCGCGCGAAGAATCGCATGCAACACCATGTCGAAAGGAAGTTTATCTTCCTTGCCAACAAGCTCAAACAAAGTCCCTCCAGATTCAGGAATTTCAGGTGTTAAGTCTTCCAATGGCGTTTCTGAGTCTGAAACTCGTGTATTCGTGAGGAGAAGACTGAAAAAGAAGAATGCTGAAGGTCAAGATAGCCGGCTTGAAGTTGAACCTAATGTCGACGCTAAACGCTGCCGTCCTCCTAATATTGAAGATTTTGCATTCAAAAGAACAAAGGATGATTCTCCTGGATCAAGGAAGTCAAAGCCTCCTCTAGATCCTCTTCTCACAGAAATTGAAGATTCTATTCCTACTAGACAAAAAGGCATAGCAGAAGGAGGTAAACCACCTGTGAATTGGGAAAAAATTCATGAAGGAATTCGTGAAATGAGAGCCTCTGAAGACGCTCCAGTAGATACCATGGGATGTGGGCAAGCTGGCAGTGCTCTTCCTCCCAAGGAAAGAAGATTTGCTGTCTTGGCATCTTCTCTTCTCTCAAGCCAAACCAAAGACCACGTAACTCATGGAGCAGCATTGCGTCTCCAAGAAAGTGGTCTCCTTACTGCTGATGCCATGGACAAAGCTGATGAAGCAACCATTAAAAGCTTGATTTACCCTGTTGGATTTTATTCTACAAAGGCTAGGAATTTGAAGAAGATTGCAAAAATATGTCTTATGAAGTATGATGGGGACATACCTAGATCATTGGAGGAGCTACTTCTACTACCTGGGATAGGTCCTAAGATTGCACATTTGAAAACATCCACTCCTGAAGAAACTCGAGTGGCATTAGAACGGTGGCTGCCGAAGGAAGAATGGGTGCCAATTAATCCTCTTCTGGTTGGATTTGGACAGACTATTTGCACTCCCCTTAGACCCAAATGTGGAAATTGCAGTGTTAGCAACTTGTGTCCATCTGCATTCAAGGAGTCTTCTAGCCCATCTCCCAAGTTAAAGCGTTTAAGTTCCACCAAAAAACTATGA 1068 43.35 MAMILICPIRTPALSITFARRIACNTMSKGSLSSLPTSSNKVPPDSGISGVKSSNGVSESETRVFVRRRLKKKNAEGQDSRLEVEPNVDAKRCRPPNIEDFAFKRTKDDSPGSRKSKPPLDPLLTEIEDSIPTRQKGIAEGGKPPVNWEKIHEGIREMRASEDAPVDTMGCGQAGSALPPKERRFAVLASSLLSSQTKDHVTHGAALRLQESGLLTADAMDKADEATIKSLIYPVGFYSTKARNLKKIAKICLMKYDGDIPRSLEELLLLPGIGPKIAHLKTSTPEETRVALERWLPKEEWVPINPLLVGFGQTICTPLRPKCGNCSVSNLCPSAFKESSSPSPKLKRLSSTKKL 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 59111391 59120307 + Hsped.05g12270.1 Hepe05g1227 570492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1227 355 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 97 280 - GO:0000703(PANTHER)|GO:0003906(PANTHER)|GO:0005634(PANTHER)|GO:0006285(PANTHER)|GO:0006296(PANTHER)|GO:0042644(PANTHER)
Hepe05g1227 355 Pfam Helix-hairpin-helix motif 255 279 IPR000445 GO:0003677(InterPro)
Hepe05g1227 355 MobiDBLite consensus disorder prediction 29 61 - -
Hepe05g1227 355 FunFam Endonuclease III-like protein 1 180 284 - -
Hepe05g1227 355 MobiDBLite consensus disorder prediction 62 115 - -
Hepe05g1227 355 Pfam HhH-GPD superfamily base excision DNA repair protein 190 254 IPR003265 GO:0006284(InterPro)
Hepe05g1227 355 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 316 332 IPR004035 -
Hepe05g1227 355 MobiDBLite consensus disorder prediction 29 124 - -
Hepe05g1227 355 Gene3D - 281 333 IPR023170 -
Hepe05g1227 355 CDD ENDO3c 185 312 IPR003265 GO:0006284(InterPro)
Hepe05g1227 355 SUPERFAMILY DNA-glycosylase 157 344 IPR011257 GO:0003824(InterPro)|GO:0006281(InterPro)
Hepe05g1227 355 SMART ccc3 315 335 IPR003651 GO:0051539(InterPro)
Hepe05g1227 355 SMART endo3end 193 314 IPR003265 GO:0006284(InterPro)
Hepe05g1227 355 Gene3D Hypothetical protein; domain 2 176 280 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1227 K10773 - - csv:101212347 528.865
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1201 . . . . . . . . . . . Cma14g01469 . Car14g01306 . . Cpe03g01238 Bhi01g02693 . . . Hepe05g1227 . Lcy11g1140 . . . . . . . . . . Cone11ag0617 . . . Cme07g01894 . . Bda11g00458 . . . . Bma06g01418 . . Cmo14g01508 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010237 1 4 0 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 32