Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1229 ATGGATTCCGACGACAGCCTCCCGCTGAGCGAGCGACCGGAGTGGTCCGACGTAACTCCGCTGCCGCAGGACGATGGTCTGAATCCGGTTGTGGCGATTGCCTACAAGGAAGACTTCGTTGAGGTCATGAATTACTTCCGAGCTGTTTATCGAGCAGATGAGCGTTCTCCTCGCTCTCTCCACCTCACTGCCGAAGCCATTGACATGAATCCTGGCAATTACACCGTCTGGCATTTCAGGCGTTTGATACTCGAGGCTCTTAATATTGATTTACAAGATGAACTAGATTTCATTGACGACATTGCTGAGTCTAACACCAAAAACTATCAGATATGGCATCATAGGCGATGGGTTGCTCAGAAACTGGGAACTGATGCATCAATCAAAGAGCTTAAATTCACCAAAAATATTCTCTCCCTTGATTCCAAAAATTATCATGCCTGGTCTCATAGACAGTGGGTTCTTCAGGCACTGGGTGGATGGGAAGATGAACTTGACTATTGTCAAGAACTCCTACAGGAAGATGTTTTTAATAATTCTGCATGGAATCAGAGATACGTCGTCATAACCAAATCTCCCTTACTGGGTGGCCTAAAAGCCATGAGAGAGTCTGAAGTGAATTATACTGTTGAAGCCATTCTTGCTCATCCTGAAAATGAGAGTTCTTGGAGATATCTGCGCGGACTTTACGCAGGTGACACGCACTCATGGATTACTGATCCTCAAGTTTCTTCCGTCTGTATGAAAGTTTTGAGCGGTAAAAGTAACTTTGTTTTTGCTTTGAGCACTCTGTTGGATCTTCTCTGCCATGGTTTCCAATCAAGCCAAGAGTTCAGAGATGCTGTTGATGCTCTTAGGATACCCGATTGTCCAACAGATTCCGACCTAGCTAGAACGGTGTGCTTAATCTTGGAACGAGTCGACCCTATCCGAGTTAACTATTGGCTCTGGCAGAAGAGCAAGCTTCCTCAGTAA 975 45.54 MDSDDSLPLSERPEWSDVTPLPQDDGLNPVVAIAYKEDFVEVMNYFRAVYRADERSPRSLHLTAEAIDMNPGNYTVWHFRRLILEALNIDLQDELDFIDDIAESNTKNYQIWHHRRWVAQKLGTDASIKELKFTKNILSLDSKNYHAWSHRQWVLQALGGWEDELDYCQELLQEDVFNNSAWNQRYVVITKSPLLGGLKAMRESEVNYTVEAILAHPENESSWRYLRGLYAGDTHSWITDPQVSSVCMKVLSGKSNFVFALSTLLDLLCHGFQSSQEFRDAVDALRIPDCPTDSDLARTVCLILERVDPIRVNYWLWQKSKLPQ 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 59128768 59135757 - Hsped.05g12290.1 Hepe05g1229 570494

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1229 324 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 161 194 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Hepe05g1229 324 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 55 89 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Hepe05g1229 324 MobiDBLite consensus disorder prediction 1 21 - -
Hepe05g1229 324 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 126 160 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Hepe05g1229 324 PANTHER PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT 16 323 - GO:0004660(PANTHER)|GO:0004662(PANTHER)|GO:0005737(PANTHER)|GO:0005953(PANTHER)|GO:0005965(PANTHER)|GO:0018343(PANTHER)|GO:0018344(PANTHER)
Hepe05g1229 324 SUPERFAMILY Protein prenylyltransferase 4 322 - -
Hepe05g1229 324 FunFam Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 1 324 - -
Hepe05g1229 324 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 90 124 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Hepe05g1229 324 Pfam Protein prenyltransferase alpha subunit repeat 60 86 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Hepe05g1229 324 Pfam Protein prenyltransferase alpha subunit repeat 129 158 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Hepe05g1229 324 Pfam Protein prenyltransferase alpha subunit repeat 203 230 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Hepe05g1229 324 Pfam Protein prenyltransferase alpha subunit repeat 161 190 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Hepe05g1229 324 Pfam Protein prenyltransferase alpha subunit repeat 91 121 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
Hepe05g1229 324 Gene3D Protein prenylyltransferase 1 324 - -
Hepe05g1229 324 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 201 235 IPR002088 GO:0008318(InterPro)|GO:0018342(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1229 K05955 - - csv:101212104 582.793
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1200 . . . . . . . . . . . Cma14g01470 . . Sed05g1558 . . Bhi01g02690 Tan10g1287 Cmetu04g0591 . Hepe05g1229 . Lcy11g1142 . . . . . . . . . . . . . . . . Blo07g00087 Bda11g00457 . . Bpe13g00739 . . . . Cmo14g01509 . . . . . . . . . . . . . Cla07g01486 Cam07g1582 Cec07g1682 Cco07g1643 Clacu07g1573 Cmu07g1541 Cre07g1918 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008182 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 2 1 1 35