Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1235 ATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGTGAGCTTGTTTTCAAGGAAGATGGTCAGGAGTATGCCCAAGTTCTCAGAATGTTAGGGAATGGTCGGTGTGAGGCGATGTGCATAGATGGGACAAAGCGTCTTTGCCATATCCGAGGGAAGATGCACAAAAAGGTTTGGATCGCAGCTGGTGATATAATACTCGTGGGTCTTCGCGACTATCAGGATGACAAAGCTGATGTTATCCTCAAGTACATGCCTGATGAAGCAAGGCTGTTGAAGGCATATGGTGAACTTCCTGAGAACACACGTCTCAACGAGGGTATCGCTGGTGGTATCGATGATGAGGATGATGGTGGCGCTGATGACTATCTTGAGTTCGAGGATGAAGATATTGATAAGATTTAG 438 46.58 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 59277457 59277894 + Hsped.05g12350.1 Hepe05g1235 570500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1235 145 Pfam Translation initiation factor 1A / IF-1 32 93 IPR006196 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Hepe05g1235 145 ProSiteProfiles S1 domain IF1 type profile. 22 96 IPR006196 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Hepe05g1235 145 SUPERFAMILY Nucleic acid-binding proteins 2 144 IPR012340 -
Hepe05g1235 145 ProSitePatterns Eukaryotic initiation factor 1A signature. 41 63 IPR018104 GO:0003743(InterPro)|GO:0006413(InterPro)
Hepe05g1235 145 FunFam Eukaryotic translation initiation factor 1A 2 145 - -
Hepe05g1235 145 CDD S1_IF1A 33 109 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Hepe05g1235 145 Gene3D - 2 145 IPR012340 -
Hepe05g1235 145 MobiDBLite consensus disorder prediction 1 25 - -
Hepe05g1235 145 SMART eIF1neu4 28 110 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Hepe05g1235 145 Hamap Translation initiation factor 1A [eif1a]. 16 110 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Hepe05g1235 145 PANTHER EIF-1A 1 145 IPR001253 GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005737(PANTHER)|GO:0006413(PANTHER)|GO:0006413(InterPro)
Hepe05g1235 145 NCBIfam translation initiation factor eIF-1A 14 110 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0272 Hepe-Chr2:2661534 Hepe05g1235 Hepe-Chr5:59277457 1.32e-57 dispersed
Hepe05g1235 Hepe-Chr5:59277457 Hepe08g0412 Hepe-Chr8:3671443 4.82e-98 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1235 K03236 - vvi:100252402 261.922