Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe05g1236 | ATGTCTTCGCAAGACGCCTCCCTCCCCAAATGGGCTTCCATGCCTTGTGTAATGGGAATCGACGAAGCTGGTCGAGGCCCCGTTCTAGGCCCAATGGTGTATGGATGCTTGTACTGCGCTAGTTCCTATTTGAAAGAACTTTCCTCTTTGAGTTTTGCAGATTCAAAAACTTTGAAAGAAGAGAAGAGGGAGGAATTGTTTCAAAATTTGAAGGCTAACGAATCTATTGGATGGGCTGTTGATGTCATAGATCCTCGGGAGCTTTCATCCAAAATGCTCAATAAAGTTAAGATAAACTTGAATGAAATTTCACATGACTCTGCAATGGGTCTTGTCACCAAGGTTCTAGGCATGGGAGTTCTTTTAACTGAGGTTTATGTGGATACTGTTGGAGATCCTGAAAAGTACAGAATAAAATTATCTGAAAAATTTCCCAATGTAAAATTTGTCGTTGCAAAGAAGGCTGATAGTTTATATCCTGTTGTCAGTGGGGCAAGTATAGTCGCAAAGGTAATGCTAAAAACTTTCTTCCTAGATTTGGCATTCCAACTGTTTACCACACTTAAGTTCATCAATTTGACTTGTAGGTCACAAGAGATCGTGCGTTGCGGGAATGGGCGTTGGAGGAAACAGCTGAAAACATGCATAGAAACTTTGGTTCTGGATACCCTGGAGATCCAACAACGAAATCTTGGTTAG | 699 | 41.34 | MSSQDASLPKWASMPCVMGIDEAGRGPVLGPMVYGCLYCASSYLKELSSLSFADSKTLKEEKREELFQNLKANESIGWAVDVIDPRELSSKMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFVVAKKADSLYPVVSGASIVAKVMLKTFFLDLAFQLFTTLKFINLTCRSQEIVRCGNGRWRKQLKTCIETLVLDTLEIQQRNLG | 232 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 59279431 | 59283609 | + | Hsped.05g12360.1 | Hepe05g1236 | 570501 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe05g1236 | 232 | Pfam | Ribonuclease HII | 18 | 173 | IPR024567 | GO:0004523(InterPro) | |
| Hepe05g1236 | 232 | CDD | RNase_HII_eukaryota_like | 18 | 171 | - | - | |
| Hepe05g1236 | 232 | Gene3D | - | 2 | 181 | IPR036397 | GO:0003676(InterPro) | |
| Hepe05g1236 | 232 | SUPERFAMILY | Ribonuclease H-like | 16 | 183 | IPR012337 | - | |
| Hepe05g1236 | 232 | ProSiteProfiles | Ribonuclease (RNase) H type-2 domain profile. | 15 | 232 | IPR024567 | GO:0004523(InterPro) | |
| Hepe05g1236 | 232 | NCBIfam | ribonuclease HII | 17 | 172 | IPR004649 | GO:0004523(InterPro)|GO:0016070(InterPro) | |
| Hepe05g1236 | 232 | PANTHER | RIBONUCLEASE H2 SUBUNIT A | 6 | 172 | IPR001352 | GO:0003723(InterPro)|GO:0004523(PANTHER)|GO:0004523(InterPro)|GO:0006298(PANTHER)|GO:0032299(PANTHER)|GO:0043137(PANTHER) | |
| Hepe05g1236 | 232 | FunFam | Ribonuclease | 1 | 183 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe05g1236 | K10743 | - | csv:101210143 | 319.701 |