Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe05g1238 ATGGGGTTATTCTTGTTGTTGTTGGTGGATTTGATAGCTTTGTTCTTGAAGAAGATGTGTGGATGGAGAGGTGGATTGTTTGTGGTATTGGTTGTTTTTGCAGATATGTGTTTGTTGGTGTCTGGTTTAGGTTCAATGTCTTCTGTTGCTGTTTCTTATGGTGAGAAAGGGCCTGTTTTCTGTGGTTTAAAGTCAGATGGGTCTCATCTTGTGAGCTGTTTTGGTTCTAATTCTGCCATTACTTATGGAACCCCTTCTCATTTCCCATTCATTGGTCTCACTGCTGGTAATGGATTTGTTTGTGGGCTTCTTTTGGATTCTAATCAACCTTATTGTTGGGGAAGTAGTGGCTATGTTCAAATGGGTGTTCCTCAGCCCATGATCAAAGGAGCTCAATACATGGAAATCAGTGCTGGTGATTACCATCTCTGTGGACTCCGAACGCCGCTGACTGGAAGGCGTAGGAACACGTCCTTTGTCGATTGTTGGGGTTACAACATGACGAGAACCTTTGAGTTTGATGGCCCGATTGAATCGATCTCGGCGGGGTCTGAGTTCAACTGTGGACTGTTTTCTCTTAATAGAACTGTTTTCTGTTGGGGTGATGAGACGAGCAGCCGGGTTATCAGTTTGATACCTAAATATATGAGGTTTCAAAAGATTGCTTCGGGTGGATATCATGTTTGCGGGATCTTAGACGGCGTGAAGTCGAGGGCGTTCTGTTGGGGAAGGAGTTTAGACATTGAAGAGGAGATCTCAGTAGCATATTCAGGTGAAGGAAATGTAGACTTGGTTCCAGCTGATCCATTGGACTCTGTTGTTGGGGGTAAATTCCATGCTTGCGGAATCAAGAGCTTGGACCGTGGCGTGGTTTGTTGGGGTTTTATGGTCAAACCGAGTACTCCTGCACCGGATGGGATTAAAGTTTACGACATTGCAGCTGGAGATTACTTCACCTGTGGAATTCTAGCTGAAAAATCTCTCCTGCCTGTTTGCTGGGGTCTTGGATTTCCTACTTCTATACCTTTAGCTGTCTCACCTGGAATCTGTAAAGCAACTCCTTGTGCTCCGGGTTTTTACGAAATGAGCCAAGACAACGCTAGGTGTAAGTCGCCAAGTTTTCATGTTTGTATGCCCTGCAGTACTGCTTGCCCTCCTGAGATGTACCAAAAAATTGAGTGCTCCTTAAAATCTGATAGGCATTGTGAATATAACTGCTCAAGTTGCTTTTCTCCTGAATGCTCCTCAAACTGCTCATCCATGGGGAAGAAAAATGAGAAGCTCTGGTCTATGCAGCTTCCAGTTCTTGTAGCTGAGATTGCTTTTGCTGTGTTTTTGGTAGCTATTGTGTCTATAACTGCAATCTTATACGTTCGATACAAGTTACGGAACTGTCATTGCTCGGGAAAGGAGTTGAAGTCCAAGAGAAACAAAGGGACTGCCTCTTCCTTCCCGAAGGAAAACTATAAAATACGTCCCGACTTAGACGAGCTGAAGATAAGGAGGGCTGAGATGTTCACCTATGAAGAACTCCAGAGAGCGACGTGTGGGTTTAAGGATGAGTCTATCGTGGGAAAGGGAAGTTTCTCCTGTGTTTTCCGAGGTGTTTTAAAGGATGGGACGGTTGTCGCGGTTAAACGAGCTATAATGTCTCCCAATATGCAGAAGAATTCAAAAGAGTTCCACACTGAACTTGACTTGCTGTCAAGATTAAACCATGCCCATTTGCTTAATCTGCTTGGTTATTGTGAAGAAGGTGGAGAGAGGCTTCTAGTTTATGAGTTCATGGCTCATGGTTCCTTGCATCAGCACCTCCATGGCAAGAACAATGCCTTGAAAGAGCAATTAGATTGGATAAGAAGGGTCACGATTGCAGTCCAAGCAGCCCGGGGAATCGAATACTTGCACGGTTATGCTTGTCCTCCCGTCATTCATCGAGACATTAAGTCGTCAAACATTCTCATCGACGAAGAGCATAATGCTCGAGTTGCTGATTTTGGCTTGTCCTTGTTGGGACCGACTGATAGTAGCTCTCCATTAGCCGAGCTACCAGCCGGGACTCTCGGCTATCTCGATCCTGAATACTATAGACTTCATTACCTTACCACCAAGTCCGATGTCTATAGCTTTGGTGTTTTGCTACTAGAAATTCTCAGTGGTAGAAAAGCCATTGATATGCAATATGAAGAAGGGAACATAGTAGAATGGGCAGTGCCTCTAATAAGATCTGGAGATATATCTGCAATTTTAGATCCGATGCTAAAACCGCCACCCGATATCGAAGCGTTGAAGAGGATTGCAAATGTAGCCTGTAAATGTGTGAGAATGAGAGCGAAGGAGAGGCCATCGATGGACAAAGTGACAACTGCATTGGAGCGTGCACTCGCCCAATTAATGGGAAGCCCATGTAACGAACAACCGATCTTACCAACGGAGGTGGTTTTGGGAAGCAGTAGACTACACAAAAAGTCATCTCAAAGATCATCGAACCGTTCAGTCTCGGAAACGGACATAGCAGAAGCTGAGGATCAAAGGTTCGAGTTCAGAGCTCCATCGTGGATTACGTTCCCGAGCGTGACGTCGTCCCAGAGGAGGAAATCGTCAGTGTCGGAAGCAGATGTTGATGGGAAGAATATGGAAGGAAGAAATGGAGGGAATTGTGGAGGTGTTGGGGATGGATTGAAGAGTTTAGAGGAAGAGATTGGGCCAGCTTCCCCTCAGGAAAAGTTGTTCTTGGAGCACAATTTCTAA 2751 45.07 MGLFLLLLVDLIALFLKKMCGWRGGLFVVLVVFADMCLLVSGLGSMSSVAVSYGEKGPVFCGLKSDGSHLVSCFGSNSAITYGTPSHFPFIGLTAGNGFVCGLLLDSNQPYCWGSSGYVQMGVPQPMIKGAQYMEISAGDYHLCGLRTPLTGRRRNTSFVDCWGYNMTRTFEFDGPIESISAGSEFNCGLFSLNRTVFCWGDETSSRVISLIPKYMRFQKIASGGYHVCGILDGVKSRAFCWGRSLDIEEEISVAYSGEGNVDLVPADPLDSVVGGKFHACGIKSLDRGVVCWGFMVKPSTPAPDGIKVYDIAAGDYFTCGILAEKSLLPVCWGLGFPTSIPLAVSPGICKATPCAPGFYEMSQDNARCKSPSFHVCMPCSTACPPEMYQKIECSLKSDRHCEYNCSSCFSPECSSNCSSMGKKNEKLWSMQLPVLVAEIAFAVFLVAIVSITAILYVRYKLRNCHCSGKELKSKRNKGTASSFPKENYKIRPDLDELKIRRAEMFTYEELQRATCGFKDESIVGKGSFSCVFRGVLKDGTVVAVKRAIMSPNMQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEFMAHGSLHQHLHGKNNALKEQLDWIRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPTDSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVEWAVPLIRSGDISAILDPMLKPPPDIEALKRIANVACKCVRMRAKERPSMDKVTTALERALAQLMGSPCNEQPILPTEVVLGSSRLHKKSSQRSSNRSVSETDIAEAEDQRFEFRAPSWITFPSVTSSQRRKSSVSEADVDGKNMEGRNGGNCGGVGDGLKSLEEEIGPASPQEKLFLEHNF 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 59301029 59304584 - Hsped.05g12380.1 Hepe05g1238 570503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe05g1238 916 FunFam Serine/threonine-protein kinase-like protein CR4 42 209 - -
Hepe05g1238 916 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 354 402 IPR001368 GO:0005515(InterPro)
Hepe05g1238 916 CDD STKc_IRAK 524 793 - -
Hepe05g1238 916 Gene3D Phosphorylase Kinase; domain 1 490 595 - -
Hepe05g1238 916 FunFam serine/threonine-protein kinase-like protein CCR1 488 595 - -
Hepe05g1238 916 FunFam Receptor protein kinase CRINKLY4 596 798 - -
Hepe05g1238 916 SUPERFAMILY RCC1/BLIP-II 43 295 IPR009091 -
Hepe05g1238 916 Gene3D Transferase(Phosphotransferase) domain 1 596 803 - -
Hepe05g1238 916 MobiDBLite consensus disorder prediction 819 835 - -
Hepe05g1238 916 Gene3D - 39 209 IPR009091 -
Hepe05g1238 916 SUPERFAMILY Protein kinase-like (PK-like) 501 791 IPR011009 -
Hepe05g1238 916 SMART serkin_6 518 795 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe05g1238 916 ProSitePatterns Protein kinases ATP-binding region signature. 524 546 IPR017441 GO:0005524(InterPro)
Hepe05g1238 916 MobiDBLite consensus disorder prediction 819 838 - -
Hepe05g1238 916 MobiDBLite consensus disorder prediction 859 916 - -
Hepe05g1238 916 Pfam Protein tyrosine and serine/threonine kinase 522 790 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe05g1238 916 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 37 840 - -
Hepe05g1238 916 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe05g1238 916 Gene3D - 210 345 IPR009091 -
Hepe05g1238 916 ProSiteProfiles Protein kinase domain profile. 518 795 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0716 Hepe-Chr1:69905240 Hepe05g1238 Hepe-Chr5:59301029 5.94e-90 dispersed
Hepe05g1238 Hepe-Chr5:59301029 Hepe06g0167 Hepe-Chr6:6067003 7.55e-94 dispersed
Hepe02g1208 Hepe-Chr2:15167726 Hepe05g1238 Hepe-Chr5:59301029 1.05e-72 transposed
Hepe04g0927 Hepe-Chr4:63545413 Hepe05g1238 Hepe-Chr5:59301029 7.23e-94 transposed
Hepe10g0450 Hepe-Chr10:5125225 Hepe05g1238 Hepe-Chr5:59301029 8.55e-68 transposed
Hepe03g0996 Hepe-Chr3:52363226 Hepe05g1238 Hepe-Chr5:59301029 7.67e-62 wgd
Hepe03g0732 Hepe-Chr3:19331809 Hepe05g1238 Hepe-Chr5:59301029 8.24e-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72821 PF07714 PK_Tyr_Ser-Thr 5.80E-44 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe05g1238 - - - 0.0